diff --git a/config.yaml b/config.yaml index 1b2560f0..300c43f9 100644 --- a/config.yaml +++ b/config.yaml @@ -15,65 +15,64 @@ mem: 1000GB # Sync options for automatically copying data from ephemeral scratch space to # longer term storage sync: - enable: False # set path below and change to true - path: null # Set to location on /g/data or a remote server and path (rsync syntax) + enable: false # set path below and change to true + path: null # Set to location on /g/data or a remote server and path (rsync syntax) # Modules for loading model executables modules: use: - - /g/data/vk83/modules + - /g/data/vk83/modules + - /g/data/vk83/prerelease/modules load: - - access-om2/2025.12.000 - - model-tools/fre-nctools/2024.05-1 - -# Model configuration + - access-om2/pr138-16 + - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 input: - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc submodels: - - name: atmosphere - model: yatm - exe: yatm.exe - input: - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc - - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-4/data - ncpus: 1 +- name: atmosphere + model: yatm + exe: yatm.exe + input: + - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc + - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-4/data + ncpus: 1 - - name: ocean - model: mom - exe: mom5_access_om - input: - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table - - /g/data/vk83/configurations/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc - ncpus: 216 +- name: ocean + model: mom + exe: mom5_access_om + input: + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table + - /g/data/vk83/configurations/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc + ncpus: 216 - - name: ice - model: cice5 - exe: cice_auscom_360x300_24x1_24p.exe - input: - - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/i2o.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/o2i.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc - ncpus: 24 +- name: ice + model: cice5 + exe: cice_auscom_360x300_15x300.exe + input: + - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/i2o.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/o2i.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc + ncpus: 24 # Collation collate: @@ -90,23 +89,23 @@ stacksize: unlimited restart_freq: 5YS mpi: flags: - - --mca io ompio --mca io_ompio_num_aggregators 1 + - --mca io ompio --mca io_ompio_num_aggregators 1 qsub_flags: -W umask=027 env: - UCX_LOG_LEVEL: 'error' + UCX_LOG_LEVEL: 'error' manifest: reproduce: - exe: True + exe: false # set number of cores per node (28 for normalbw, 48 for normal on gadi) platform: - nodesize: 48 + nodesize: 48 # sweep and resubmit on specific errors - see https://github.com/payu-org/payu/issues/241#issuecomment-610739771 userscripts: - error: tools/resub.sh - run: rm -f resubmit.count - sync: /g/data/vk83/apps/om2-scripts/concatenate_ice/concat_ice_daily.sh + error: tools/resub.sh + run: rm -f resubmit.count + sync: /g/data/vk83/apps/om2-scripts/concatenate_ice/concat_ice_daily.sh payu_minimum_version: 1.2.1 diff --git a/ice/cice_in.nml b/ice/cice_in.nml index 44614e46..b2b0c389 100644 --- a/ice/cice_in.nml +++ b/ice/cice_in.nml @@ -31,6 +31,7 @@ restart_dir = './RESTART/' restart_ext = .false. restart_file = 'iced' + restart_format = 'pio' runtype = 'initial' use_leap_years = .false. use_restart_time = .true.