From e9b37ed9a07bd4810ebcf185bfd57ccb84eafad0 Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Wed, 25 Feb 2026 00:52:33 +0000 Subject: [PATCH 01/11] auto: use access-om2/pr138-1 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22376965677 --- config.yaml | 109 ++++++++++++++++++++++++++-------------------------- 1 file changed, 54 insertions(+), 55 deletions(-) diff --git a/config.yaml b/config.yaml index 1b2560f0..97051b7b 100644 --- a/config.yaml +++ b/config.yaml @@ -15,65 +15,64 @@ mem: 1000GB # Sync options for automatically copying data from ephemeral scratch space to # longer term storage sync: - enable: False # set path below and change to true - path: null # Set to location on /g/data or a remote server and path (rsync syntax) + enable: false # set path below and change to true + path: null # Set to location on /g/data or a remote server and path (rsync syntax) # Modules for loading model executables modules: use: - - /g/data/vk83/modules + - /g/data/vk83/modules + - /g/data/vk83/prerelease/modules load: - - access-om2/2025.12.000 - - model-tools/fre-nctools/2024.05-1 - -# Model configuration + - access-om2/pr138-1 + - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 input: - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc +- /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc submodels: - - name: atmosphere - model: yatm - exe: yatm.exe - input: - - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc - - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-4/data - ncpus: 1 +- name: atmosphere + model: yatm + exe: yatm.exe + input: + - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc + - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-4/data + ncpus: 1 - - name: ocean - model: mom - exe: mom5_access_om - input: - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table - - /g/data/vk83/configurations/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc - - /g/data/vk83/configurations/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc - ncpus: 216 +- name: ocean + model: mom + exe: mom5_access_om + input: + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table + - /g/data/vk83/configurations/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc + - /g/data/vk83/configurations/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc + ncpus: 216 - - name: ice - model: cice5 - exe: cice_auscom_360x300_24x1_24p.exe - input: - - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/i2o.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/o2i.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc - - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc - ncpus: 24 +- name: ice + model: cice5 + exe: cice_auscom_360x300_24x1_24p.exe + input: + - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/i2o.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/o2i.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc + - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc + ncpus: 24 # Collation collate: @@ -90,23 +89,23 @@ stacksize: unlimited restart_freq: 5YS mpi: flags: - - --mca io ompio --mca io_ompio_num_aggregators 1 + - --mca io ompio --mca io_ompio_num_aggregators 1 qsub_flags: -W umask=027 env: - UCX_LOG_LEVEL: 'error' + UCX_LOG_LEVEL: 'error' manifest: reproduce: - exe: True + exe: false # set number of cores per node (28 for normalbw, 48 for normal on gadi) platform: - nodesize: 48 + nodesize: 48 # sweep and resubmit on specific errors - see https://github.com/payu-org/payu/issues/241#issuecomment-610739771 userscripts: - error: tools/resub.sh - run: rm -f resubmit.count - sync: /g/data/vk83/apps/om2-scripts/concatenate_ice/concat_ice_daily.sh + error: tools/resub.sh + run: rm -f resubmit.count + sync: /g/data/vk83/apps/om2-scripts/concatenate_ice/concat_ice_daily.sh payu_minimum_version: 1.2.1 From c8c946b2539c854d396671f1c397d00e97b03816 Mon Sep 17 00:00:00 2001 From: Dougie Squire Date: Wed, 25 Feb 2026 12:06:00 +1100 Subject: [PATCH 02/11] Update name of CICE exe --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index 97051b7b..a7115cbc 100644 --- a/config.yaml +++ b/config.yaml @@ -64,7 +64,7 @@ submodels: - name: ice model: cice5 - exe: cice_auscom_360x300_24x1_24p.exe + exe: cice_auscom_360x300_15x300.exe input: - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc From 31ed9c45248771b4982280bbcbba728e03c37a2d Mon Sep 17 00:00:00 2001 From: Dougie Squire Date: Wed, 25 Feb 2026 12:14:51 +1100 Subject: [PATCH 03/11] Add restart_format = 'pio' --- ice/cice_in.nml | 1 + 1 file changed, 1 insertion(+) diff --git a/ice/cice_in.nml b/ice/cice_in.nml index 44614e46..b2b0c389 100644 --- a/ice/cice_in.nml +++ b/ice/cice_in.nml @@ -31,6 +31,7 @@ restart_dir = './RESTART/' restart_ext = .false. restart_file = 'iced' + restart_format = 'pio' runtype = 'initial' use_leap_years = .false. use_restart_time = .true. From ddb58d805fda24f92d1f5593df992aed8259346c Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Sun, 1 Mar 2026 23:30:52 +0000 Subject: [PATCH 04/11] auto: use access-om2/pr138-2 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22555440525 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index a7115cbc..452fad41 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-1 + - access-om2/pr138-2 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 From c1220f9cd4d60e39a5fc3b039667c73080e2a698 Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Mon, 2 Mar 2026 01:13:54 +0000 Subject: [PATCH 05/11] auto: use access-om2/pr138-4 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22557435246 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index 452fad41..4ee2697e 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-2 + - access-om2/pr138-4 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 From ee7f64751b597e47758d93f72c28c47db8de1aef Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Tue, 3 Mar 2026 23:10:01 +0000 Subject: [PATCH 06/11] auto: use access-om2/pr138-5 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22647004026 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index 4ee2697e..b5b077cd 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-4 + - access-om2/pr138-5 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 From 5d7113716eb31d66dc8e9eca7f18310a98bbf7c6 Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Wed, 4 Mar 2026 00:42:55 +0000 Subject: [PATCH 07/11] auto: use access-om2/pr138-6 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22649645106 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index b5b077cd..8850c97c 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-5 + - access-om2/pr138-6 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 From 3b3b97911a0e0d408481ae2e898818c5bf891a77 Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Wed, 4 Mar 2026 01:47:30 +0000 Subject: [PATCH 08/11] auto: use access-om2/pr138-8 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22651340233 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index 8850c97c..70dbc21d 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-6 + - access-om2/pr138-8 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 From bd50205136554a3a7376779181ef35c11bd1eb51 Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Wed, 4 Mar 2026 04:51:51 +0000 Subject: [PATCH 09/11] auto: use access-om2/pr138-13 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22655605101 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index 70dbc21d..e9e3b369 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-8 + - access-om2/pr138-13 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 From 53d377c97e659e8e3f17050d7e942351c5eedc33 Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Wed, 4 Mar 2026 06:30:53 +0000 Subject: [PATCH 10/11] auto: use access-om2/pr138-14 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22657954237 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index e9e3b369..52d5d4d2 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-13 + - access-om2/pr138-14 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2 From 24481d852b32be777414f2f4056aea7e1fb1607a Mon Sep 17 00:00:00 2001 From: access-bot <113399144+access-bot@users.noreply.github.com> Date: Wed, 4 Mar 2026 07:48:35 +0000 Subject: [PATCH 11/11] auto: use access-om2/pr138-16 from https://github.com/ACCESS-NRI/ACCESS-OM2/actions/runs/22660011408 --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index 52d5d4d2..300c43f9 100644 --- a/config.yaml +++ b/config.yaml @@ -24,7 +24,7 @@ modules: - /g/data/vk83/modules - /g/data/vk83/prerelease/modules load: - - access-om2/pr138-14 + - access-om2/pr138-16 - model-tools/fre-nctools/2024.05-1 name: common model: access-om2