diff --git a/config.yaml b/config.yaml index 05f8296e5..a8198016c 100644 --- a/config.yaml +++ b/config.yaml @@ -9,18 +9,18 @@ # Using payu sync is recommend to copy data from ephemeral scratch space to # longer term storage sync: - enable: False # set path below and change to true - path: null # Set to location on /g/data (e.g. /g/data/PROJECT/USER/EXPERIMENT) - restarts: True - exclude_uncollated: False + enable: false # set path below and change to true + path: null # Set to location on /g/data (e.g. /g/data/PROJECT/USER/EXPERIMENT) + restarts: true + exclude_uncollated: false #Model software version modules: - use: - - /g/data/vk83/modules - load: - - access-om3/2025.08.001 - + use: + - /g/data/vk83/modules + - /g/data/vk83/prerelease/modules + load: + - access-om3/pr207-4 queue: normal ncpus: 240 jobfs: 10GB @@ -32,43 +32,43 @@ jobname: 100km_jra55do_ryf_wombatlite model: access-om3 exe: access-om3-MOM6-CICE6 input: - - /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.100km/2024.01.25/access-om2-100km-ESMFmesh.nc - - /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.100km/2024.01.25/access-om2-100km-nomask-ESMFmesh.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-datm-ESMFmesh.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-drof-ESMFmesh.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.100km/2025.09.22/bottom_roughness.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.100km/2025.09.22/tideamp.nc - - /g/data/vk83/configurations/inputs/access-om3/share/grids/global.100km/2020.10.22/topog.nc - - /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/global.100km/2020.05.30/ocean_hgrid.nc - - /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/global.100km/2020.05.30/ocean_mosaic.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/grids/mosaic/share/2024.05.08/grid_spec.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/grids/vertical/share/2025.03.12/ocean_vgrid.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/initial_conditions/global.100km/2025.10.24/woa23_ts_01_mom.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/surface_salt_restoring/global.100km/2025.10.24/salt_sfc_restore.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/chlorophyll/global.100km/2025.11.25/chl_globcolour_monthly_clim.nc - - /g/data/vk83/configurations/inputs/access-om3/cice/grids/global.100km/2024.05.14/kmt.nc - - /g/data/vk83/configurations/inputs/access-om3/cice/initial_conditions/global.100km/2023.07.28/iced.1900-01-01-10800.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/forcing/global.100km/2025.10.27/SFe_Hamiltonetal2020_monthly_clim.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2021.06.07/FEMIP_model_median_iron_2016_fillmiss.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.NO3_fillmiss.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.oxygen_fillmiss.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.PI_TCO2_fillmiss.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.TAlk_fillmiss.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.TCO2_fillmiss.nc - - /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/global.100km/2025.06.06/init_ocean_wombatlite.res.nc - - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-6/data - +- /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.100km/2024.01.25/access-om2-100km-ESMFmesh.nc +- /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.100km/2024.01.25/access-om2-100km-nomask-ESMFmesh.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-datm-ESMFmesh.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-drof-ESMFmesh.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.100km/2025.09.22/bottom_roughness.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.100km/2025.09.22/tideamp.nc +- /g/data/vk83/configurations/inputs/access-om3/share/grids/global.100km/2020.10.22/topog.nc +- /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/global.100km/2020.05.30/ocean_hgrid.nc +- /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/global.100km/2020.05.30/ocean_mosaic.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/grids/mosaic/share/2024.05.08/grid_spec.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/grids/vertical/share/2025.03.12/ocean_vgrid.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/initial_conditions/global.100km/2025.10.24/woa23_ts_01_mom.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/surface_salt_restoring/global.100km/2025.10.24/salt_sfc_restore.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/chlorophyll/global.100km/2025.11.25/chl_globcolour_monthly_clim.nc +- /g/data/vk83/configurations/inputs/access-om3/cice/grids/global.100km/2024.05.14/kmt.nc +- /g/data/vk83/configurations/inputs/access-om3/cice/initial_conditions/global.100km/2023.07.28/iced.1900-01-01-10800.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/forcing/global.100km/2025.10.27/SFe_Hamiltonetal2020_monthly_clim.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2021.06.07/FEMIP_model_median_iron_2016_fillmiss.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.NO3_fillmiss.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.oxygen_fillmiss.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.PI_TCO2_fillmiss.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.TAlk_fillmiss.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/share/2024.04.02/GLODAPv2.2016b.TCO2_fillmiss.nc +- /g/data/vk83/prerelease/configurations/inputs/access-om3/wombat/initial_conditions/global.100km/2025.06.06/init_ocean_wombatlite.res.nc +- /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-6/data + collate: false runlog: false -metadata: - enable: false +metadata: + enable: false manifest: reproduce: exe: false inputs: false userscripts: - archive: /usr/bin/bash /g/data/vk83/apps/om3-scripts/payu_config/archive.sh + archive: /usr/bin/bash /g/data/vk83/apps/om3-scripts/payu_config/archive.sh postscript: -v PROJECT,SCRIPTS_DIR=/g/data/vk83/apps/om3-scripts -lstorage=${PBS_NCI_STORAGE}+gdata/xp65 /g/data/vk83/apps/om3-scripts/payu_config/postscript.sh diff --git a/datm_in b/datm_in index d4c413621..83db1b38a 100644 --- a/datm_in +++ b/datm_in @@ -6,7 +6,6 @@ flds_presaero = .false. flds_presndep = .false. flds_preso3 = .false. - flds_wiso = .false. iradsw = 1 model_maskfile = "./INPUT/access-om2-100km-nomask-ESMFmesh.nc" model_meshfile = "./INPUT/access-om2-100km-nomask-ESMFmesh.nc" diff --git a/fd.yaml b/fd.yaml index e41c61dff..7d1c46a15 100644 --- a/fd.yaml +++ b/fd.yaml @@ -43,10 +43,6 @@ canonical_units: kg m-2 s-1 description: med export - atm/ocn evaporation water flux computed in medidator # - - standard_name: Faox_evap_wiso - canonical_units: kg m-2 s-1 - description: med export - atm/ocn evaporation water flux 16O, 18O, HDO computed in medidator - # - standard_name: Faox_lat alias: mean_laten_heat_flx_atm_into_ocn canonical_units: W m-2 @@ -90,10 +86,6 @@ canonical_units: kg m-2 s-1 description: lnd import to med # - - standard_name: Fall_evap_wiso - canonical_units: kg m-2 s-1 - description: lnd import to med - # - standard_name: Fall_fco2_lnd canonical_units: moles m-2 s-1 description: lnd import to med @@ -174,10 +166,6 @@ canonical_units: kg kg-1 description: lnd import to med # - - standard_name: Sl_qref_wiso - canonical_units: kg kg-1 - description: lnd import to med - # - standard_name: Sl_ram1 canonical_units: s/m description: lnd import to med @@ -186,10 +174,6 @@ canonical_units: m description: lnd import to med # - - standard_name: Sl_snowh_wiso - canonical_units: m - description: lnd import to med - # - standard_name: Sl_soilw canonical_units: m3/m3 description: lnd import to med @@ -302,61 +286,32 @@ canonical_units: kg(N)/m2/sec description: atm import to med - currently nhx and noy # - - standard_name: Faxa_prec_wiso - canonical_units: kg m-2 s-1 - description: atm import to med - # - standard_name: Faxa_rain alias: mean_prec_rate canonical_units: kg m-2 s-1 description: atm import to med # - - standard_name: Faxa_rain_wiso - alias: mean_prec_rate_wiso - canonical_units: kg m-2 s-1 - description: atm import to med - # - standard_name: Faxa_rainc canonical_units: kg m-2 s-1 description: atm import to med # - - standard_name: Faxa_rainc_wiso - canonical_units: kg m-2 s-1 - description: atm import to med - # - standard_name: Faxa_rainl canonical_units: kg m-2 s-1 description: atm import to med # - - standard_name: Faxa_rainl_wiso - canonical_units: kg m-2 s-1 - description: atm import to med - # - standard_name: Faxa_snow alias: mean_fprec_rate canonical_units: kg m-2 s-1 description: atm import to med # - - standard_name: Faxa_snow_wiso - canonical_units: kg m-2 s-1 - description: atm import to med - # - standard_name: Faxa_snowc canonical_units: kg m-2 s-1 description: atm import to med # - - standard_name: Faxa_snowc_wiso - canonical_units: kg m-2 s-1 - description: atm import to med - # - standard_name: Faxa_snowl canonical_units: kg m-2 s-1 description: atm import to med # - - standard_name: Faxa_snowl_wiso - canonical_units: kg m-2 s-1 - description: atm import to med - # - standard_name: Faxa_swnet canonical_units: W m-2 description: atm import to med @@ -430,11 +385,6 @@ canonical_units: kg kg-1 description: atm import to med - bottom layer specific humidiaty # - - standard_name: Sa_shum_wiso - alias: inst_spec_humid_height_lowest_wiso - canonical_units: kg kg-1 - description: atm import to med - bottom layer specific humidity 16O, 18O, HDO - # - standard_name: Sa_tbot alias: inst_temp_height_lowest canonical_units: K @@ -501,10 +451,6 @@ canonical_units: kg m-2 s-1 description: atm export from meditor - merged water evaporation flux # - - standard_name: Faxx_evap_wiso - canonical_units: kg m-2 s-1 - description: atm export from med - merged water evaporation flux for 16O, 18O and HDO - # - standard_name: Faxx_lat alias: mean_laten_heat_flx canonical_units: W m-2 @@ -549,10 +495,6 @@ canonical_units: kg kg-1 description: atm export from med # - - standard_name: Sx_qref_wiso - canonical_units: kg kg-1 - description: atm export from med - # - standard_name: Sx_t alias: surface_temperature canonical_units: K @@ -589,26 +531,14 @@ canonical_units: kg m-2 s-1 description: glc import tomed - glacier frozen_runoff_flux_to_ocean # - - standard_name: Fgrg_rofi_wiso - canonical_units: kg m-2 s-1 - description: glc import to med - glacier_frozen_runoff_flux_to_ocean for 16O, 18O, HDO - # - standard_name: Fgrg_rofl canonical_units: kg m-2 s-1 description: glc import to med - glacier liquid runoff flux to ocean # - - standard_name: Fgrg_rofl_wiso - canonical_units: kg m-2 s-1 - description: glc import to med - glacier_frozen_runoff_flux_to_ocean for 16O, 18O, HDO - # - standard_name: Figg_rofi canonical_units: kg m-2 s-1 description: glc import to med - glc frozen runoff_iceberg flux to ice # - - standard_name: Figg_rofi_wiso - canonical_units: kg m-2 s-1 - description: glc import to med - glc frozen runoff_iceberg flux to ice for 16O, 18O, HDO - # - standard_name: Flgg_hflx canonical_units: W m-2 description: glc import to med to med (no elevation classes) @@ -660,10 +590,6 @@ canonical_units: kg m-2 s-1 description: ice import to med # - - standard_name: Faii_evap_wiso - canonical_units: kg m-2 s-1 - description: ice import to med for 16O, 18O, HDO - # - standard_name: Faii_lat alias: mean_laten_heat_flx_atm_into_ice canonical_units: W m-2 @@ -710,24 +636,11 @@ canonical_units: W m-2 description: ice import to med to ocean - net heat flux to ocean # - - standard_name: Fioi_melth_wiso - canonical_units: kg m-2 s-1 - description: ice import to med to ocean - isotope head flux to ocean for 16O, 18O, HDO - # - - standard_name: Fioi_melth_HDO - canonical_units: kg m-2 s-1 - description: ice import to med to ocean - isotope head flux to ocean - # - standard_name: Fioi_meltw alias: mean_fresh_water_to_ocean_rate canonical_units: kg m-2 s-1 description: ice import to med to ocean - fresh water to ocean (h2o flux from melting) # - - standard_name: Fioi_meltw_wiso - alias: mean_fresh_water_to_ocean_rate_wiso - canonical_units: kg m-2 s-1 - description: ice import to med to ocean - fresh water to ocean (h2o flux from melting) for 16O, 18O, HDO - # - standard_name: Fioi_salt alias: mean_salt_rate canonical_units: kg m-2 s-1 @@ -807,10 +720,6 @@ canonical_units: kg kg-1 description: ice import to med # - - standard_name: Si_qref_wiso - canonical_units: kg kg-1 - description: ice import to med - # - standard_name: Si_t alias: sea_ice_surface_temperature canonical_units: K @@ -833,6 +742,10 @@ canonical_units: m description: ice import to med - surface_snow_water_equivalent # + - standard_name: Si_ithick + canonical_units: m + description: sea-ice export - ice thickness + # - standard_name: Si_vsno alias: mean_snow_volume canonical_units: m @@ -846,6 +759,11 @@ canonical_units: m description: ice import to med - ice floe diameter # + - standard_name: Si_bpress + alias: basal_pressure + canonical_units: Pa + description: sea-ice export - ice basal pressure + # #----------------------------------- # section: ocn import to med #----------------------------------- @@ -855,6 +773,11 @@ canonical_units: W m-2 description: ocn import to med # + - standard_name: Fioo_frazil + alias: frazil_mass_flux + canonical_units: kg m-2 s-1 + description: ocean export + # - standard_name: Faoo_fco2_ocn canonical_units: moles m-2 s-1 description: ocn import to med - surface flux of CO2 (downward positive) @@ -927,22 +850,10 @@ canonical_units: kg kg-1 description: ocn import to med # - - standard_name: So_qref_wiso - canonical_units: kg kg-1 - description: ocn import to med - # - standard_name: So_re canonical_units: 1 description: ocn import to med # - - standard_name: So_qref_wiso - canonical_units: kg kg-1 - description: ocn import to med - # - - standard_name: So_roce_wiso - canonical_units: unitless - description: ocn import to med - # - standard_name: So_s alias: s_surf canonical_units: g kg-1 @@ -1038,19 +949,10 @@ canonical_units: kg m-2 s-1 description: med export to ocn - specific humidity flux # - - standard_name: Foxx_evap_wiso - alias: mean_evap_rate_wiso - canonical_units: kg m-2 s-1 - description: med export to ocn - specific humidity flux 16O, 18O, HDO - # - standard_name: Foxx_lat canonical_units: W m-2 description: med export to ocn - latent heat flux into ocean # - - standard_name: Foxx_lat_wiso - canonical_units: W m-2 - description: med export to ocn - latent heat flux into ocean for 16O, 18O, HDO - # - standard_name: Foxx_lat canonical_units: W m-2 description: med export to ocn - latent heat flux into ocean for HDO @@ -1089,19 +991,11 @@ canonical_units: kg m-2 s-1 description: med export to ocn - water flux due to runoff (frozen) # - - standard_name: Foxx_rofi_wiso - canonical_units: kg m-2 s-1 - description: med export to ocn - water flux due to runoff (frozen) for 16O, 18O, HDO - # - standard_name: Foxx_rofl alias: mean_runoff_rate canonical_units: kg m-2 s-1 description: med export to ocn - water flux due to runoff (liquid) # - - standard_name: Foxx_rofl_wiso - canonical_units: kg m-2 s-1 - description: med export to ocn - water flux due to runoff (liquid) for 16O, 18O, HDO - # - standard_name: Foxx_swnet alias: mean_net_sw_flx canonical_units: W m-2 @@ -1162,26 +1056,14 @@ canonical_units: kg m-2 s-1 description: river import to med - water flux due to flooding # - - standard_name: Flrr_flood_wiso - canonical_units: kg m-2 s-1 - description: river import to med - water flux due to flooding for 16O, 18O, HDO - # - standard_name: Flrr_volr canonical_units: m description: river import to med - river channel total water volume # - - standard_name: Flrr_volr_wiso - canonical_units: m - description: river import to med - river channel total water volume from 16O, 18O, HDO - # - standard_name: Flrr_volrmch canonical_units: m description: river import to med - river channel main channel water volume # - - standard_name: Flrr_volrmch_wiso - canonical_units: m - description: river import to med - river channel main channel water volume from 16O, 18O, HDO - # - standard_name: Sr_tdepth canonical_units: m description: river import to med - tributary channel water depth @@ -1198,10 +1080,6 @@ canonical_units: kg m-2 s-1 description: river export to ocean - water flux due to runoff originating from glc (frozen) # - - standard_name: Forr_rofi_wiso - canonical_units: kg m-2 s-1 - description: river import to med - water flux due to runoff (frozen) for 16O, 18O, HDO - # - standard_name: Forr_rofl canonical_units: kg m-2 s-1 description: river import to med - water flux due to runoff (liquid) @@ -1210,10 +1088,6 @@ canonical_units: kg m-2 s-1 description: river import to med - water flux due to runoff originating from glc (liquid) # - - standard_name: Forr_rofl_wiso - canonical_units: kg m-2 s-1 - description: river import to med - water flux due to runoff (frozen) for 16O, 18O, HDO - # #----------------------------------- # section: wav import to med #----------------------------------- @@ -1226,6 +1100,78 @@ canonical_units: 1 description: ocean import - Langmuir multiplier # + - standard_name: Sw_Hs + canonical_units: m + description: ocean import - Significant wave height + # + - standard_name: Sw_t0m1 + canonical_units: s + description: Wind sea mean wave period (Tm0,-1) + # + - standard_name: Sw_t01 + canonical_units: s + description: Wind sea mean wave period (Tm0,1) + # + - standard_name: Sw_thm + canonical_units: radians + description: Mean wave direction + # + - standard_name: Sw_Fp + canonical_units: 1 + description: ocean import - Peak wave frequency + # + - standard_name: Sw_Dp + canonical_units: 1 + description: ocean import - Peak wave direction + # + - standard_name: Sw_ustokes_wavenumber_1 + canonical_units: m/s + description: ocean import - partitioned Stokes drift zonal wavenumber 1 + # + - standard_name: Sw_vstokes_wavenumber_1 + canonical_units: m/s + description: ocean import - partitioned Stokes drift meridional wavenumber 1 + # + - standard_name: Sw_ustokes_wavenumber_2 + canonical_units: m/s + description: ocean import - partitioned Stokes drift zonal wavenumber 2 + # + - standard_name: Sw_vstokes_wavenumber_2 + canonical_units: m/s + description: ocean import - partitioned Stokes drift meridional wavenumber 2 + # + - standard_name: Sw_ustokes_wavenumber_3 + canonical_units: m/s + description: ocean import - partitioned Stokes drift zonal wavenumber 3 + # + - standard_name: Sw_vstokes_wavenumber_3 + canonical_units: m/s + description: ocean import - partitioned Stokes drift meridional wavenumber 3 + # + - standard_name: Sw_ustokes_wavenumber_4 + canonical_units: m/s + description: ocean import - partitioned Stokes drift zonal wavenumber 4 + # + - standard_name: Sw_vstokes_wavenumber_4 + canonical_units: m/s + description: ocean import - partitioned Stokes drift meridional wavenumber 4 + # + - standard_name: Sw_ustokes_wavenumber_5 + canonical_units: m/s + description: ocean import - partitioned Stokes drift zonal wavenumber 5 + # + - standard_name: Sw_vstokes_wavenumber_5 + canonical_units: m/s + description: ocean import - partitioned Stokes drift meridional wavenumber 5 + # + - standard_name: Sw_ustokes_wavenumber_6 + canonical_units: m/s + description: ocean import - partitioned Stokes drift zonal wavenumber 6 + # + - standard_name: Sw_vstokes_wavenumber_6 + canonical_units: m/s + description: ocean import - partitioned Stokes drift meridional wavenumber 6 + # - standard_name: Sw_ustokes canonical_units: m/s description: ocean import - Stokes drift u component diff --git a/manifests/exe.yaml b/manifests/exe.yaml index 5101ae285..78430b815 100644 --- a/manifests/exe.yaml +++ b/manifests/exe.yaml @@ -2,7 +2,7 @@ format: yamanifest version: 1.0 --- work/access-om3-MOM6-CICE6: - fullpath: /g/data/vk83/apps/spack/0.22/release/linux-rocky8-x86_64_v4/oneapi-2025.2.0/access3-2025.08.000-n2qsfzdl7syl4k6m4dx3ydqxarpkmw6l/bin/access-om3-MOM6-CICE6 + fullpath: /g/data/vk83/prerelease/apps/spack/1.1/release/linux-x86_64/access3-git.a61b643634d4737244556389dd6fb7718838f3cf_2025.08.000-s2nno6zydnlp77wge27bbbs6tpzc3utj/bin/access-om3-MOM6-CICE6 hashes: - binhash: 2c767b4b07ae2e86e21b4a50582de8df - md5: cda3625020745cae76fcfc1f800ef4b3 + binhash: 789cbcab87e27cd28d18a60aea6c2451 + md5: 2c859042cfa22e474933f972c8ad0e3a