CI: remove references to TestPyPI #109
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| name: ANTsPyNet Unit Tests | |
| on: | |
| pull_request: | |
| types: [opened, synchronize] | |
| branches: [master] | |
| workflow_call: | |
| workflow_dispatch: | |
| env: | |
| USE_ANTSPY_SOURCE_BUILD: false | |
| jobs: | |
| ########################################### | |
| # Job 1 — Build ANTsXNet Data Cache | |
| # | |
| # This job downloads all ANTsXNet data and pretrained models and uploads as an artifact | |
| # The data is too big for Github's cache and runner disk space to handle | |
| # | |
| # But we still avoid independent downloads from figshare for each build matrix job | |
| # | |
| ########################################### | |
| prepare-data: | |
| name: Prepare ANTsXNet data and models | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| cache-key: ${{ steps.compute-key.outputs.cache-key }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Compute cache key | |
| id: compute-key | |
| run: | | |
| KEY="antsxnet-${{ hashFiles( | |
| 'antspynet/utilities/get_antsxnet_data.py', | |
| 'antspynet/utilities/get_pretrained_network.py' | |
| ) }}" | |
| echo "cache-key=$KEY" >> "$GITHUB_OUTPUT" | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.11" | |
| - name: Install ANTsPy for data download | |
| run: | | |
| echo "Installing ANTsPy from PyPI for cache preparation" | |
| pip install antspyx | |
| - name: Download ANTsXNet data and models | |
| run: | | |
| pip install -e . | |
| python download_antsxnet_data.py --strict --cache-dir ${{ runner.temp }}/ANTsXNet | |
| - name: Upload data to artifact | |
| uses: actions/upload-artifact@v6 | |
| with: | |
| name: ANTSXNet-data-${{ steps.compute-key.outputs.cache-key }} | |
| path: ${{ runner.temp }}/ANTsXNet | |
| retention-days: 7 | |
| ########################################### | |
| # Job 2 — Test Matrix | |
| ########################################### | |
| test: | |
| name: Test on Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-22.04 | |
| needs: prepare-data | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11", "3.13"] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Download ANTsXNet data and models artifact | |
| uses: actions/download-artifact@v7 | |
| with: | |
| name: ANTSXNet-data-${{ needs.prepare-data.outputs.cache-key }} | |
| path: ~/.keras/ANTsXNet | |
| - name: Set up Python | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install build tools | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cmake build-essential git | |
| - name: Install ANTsPy | |
| run: | | |
| if [ "$USE_ANTSPY_SOURCE_BUILD" = "true" ]; then | |
| echo "Installing ANTsPy from source..." | |
| git clone https://github.com/ANTsX/ANTsPy.git | |
| pip install scikit-build-core pybind11 nanobind | |
| pip install ./ANTsPy --no-build-isolation --no-deps | |
| else | |
| echo "Installing ANTsPy from PyPI..." | |
| pip install antspyx | |
| fi | |
| - name: Install ANTsPyNet and dependencies | |
| run: | | |
| pip install -e . | |
| - name: Run tests (individually via pytest) | |
| run: | | |
| pip install pytest pytest-xdist pytest-forked psutil | |
| for f in tests/test_*.py; do | |
| echo "🔍 Running $f" | |
| python -c "import psutil; print('Memory before:', psutil.virtual_memory().used // (1024*1024), 'MB')" | |
| pytest -v -s --forked "$f" || exit 1 | |
| python -c "import psutil; print('Memory after :', psutil.virtual_memory().used // (1024*1024), 'MB')" | |
| done |