Update GitHub Actions workflow to use 'dev-adam-appeears' branch and add local testing for actions

Author: adammwilson

.github/workflows/targets.yaml

@@ -53,13 +53,10 @@ jobs:
     steps:
       - uses: actions/checkout@v2
         with: 
-          ref: main
+          ref: dev-adam-appeears
           lfs: true
       - name: Whitelist directory
         run: git config --global --add safe.directory /__w/emma_envdata/emma_envdata
-      # - name: Checkout LFS objects
-      #   run: git lfs checkout
-      #   continue-on-error: true
       - name: Install R Package Dependencies
         run: |-
           Rscript -e "questionr::qscan(list.files(pattern='*.R',recursive=T), load = TRUE, detail = TRUE)" # this scans all scripts and installs any needed packages

ccr_startup.sh

@@ -18,4 +18,11 @@ apptainer run \
       --bind $PROJECT_FOLDER:$PROJECT_FOLDER \
       --bind $APPTAINER_CACHEDIR/tmp:/tmp \
       --bind $APPTAINER_CACHEDIR/run:/run \
-      $SIF_PATH/$SIF_FILE R       
+      $SIF_PATH/$SIF_FILE R       
+
+
+
+# Test github actions locally
+act -j targets \
+  --platform ubuntu-latest=adamwilsonlab/emma:latest \
+  --container-architecture linux/amd64