Merge pull request #366 from AdamaJava/check_pull_request

felicity731 · web-flow · commit b56336526d97 · 2024-06-12T12:41:32.000+10:00
docs(fixed typo in comment): fixed typo in comment
diff --git a/qprofiler2/src/org/qcmg/qprofiler2/util/CycleSummaryUtils.java b/qprofiler2/src/org/qcmg/qprofiler2/util/CycleSummaryUtils.java
@@ -43,7 +43,7 @@ public static String tallyMDMismatches(final String mdData, Cigar cigar, final C
 					deletion = false; 				
 					continue; 
 				}
-				// got a letter - update summary with positio					 					
+				// got a letter - update summary with position
 				// check cigar to see if we need to adjust our offset due to insertions etc
 				int additionalOffset = SAMUtils.getAdjustedReadOffset(cigar, position);	
 				if (position + additionalOffset > readBases.length) {

Original file line number	Diff line number	Diff line change
`@@ -43,7 +43,7 @@ public static String tallyMDMismatches(final String mdData, Cigar cigar, final C`
`43`	`43`	`deletion = false;`
`44`	`44`	`continue;`
`45`	`45`	`}`
`46`		`- // got a letter - update summary with positio`
	`46`	`+ // got a letter - update summary with position`
`47`	`47`	`// check cigar to see if we need to adjust our offset due to insertions etc`
`48`	`48`	`int additionalOffset = SAMUtils.getAdjustedReadOffset(cigar, position);`
`49`	`49`	`if (position + additionalOffset > readBases.length) {`