diff --git a/README.md b/README.md index 7734fa1..dd3cc7d 100644 --- a/README.md +++ b/README.md @@ -22,9 +22,9 @@ $ source benchmark.env To obtain all input data required to execute this benchmark, please [email](mailto:dan.sun@agresearch.co.nz) a Linux system administrator in AgResearch Ltd and ask for access to the [Globus share](https://app.globus.org/file-manager?origin_id=8d37b9ec-9ea1-11e9-a378-0a2653bc2660&origin_path=%2F) to download the input data via Globus. -The input data is packaged in a tarball. Please place the downloaded tarball in the root directory of the benchmark suite and then use the following command to extract data from the tarball: +The input data is packaged in a tarball (`benchmark_input_data.20190913.taz`). Please place the downloaded tarball in the root directory of the benchmark suite and then use the following command to extract data from the tarball: ``` $ cd $BENCHMARK_ROOT -$ tar xzf benchmark_input_data.taz +$ tar xzf benchmark_input_data.20190913.taz ``` diff --git a/benchmark.env b/benchmark.env index 6f66dc8..33999af 100644 --- a/benchmark.env +++ b/benchmark.env @@ -48,5 +48,7 @@ BWA_BLAST_CONDA_ENV_SPEC=$BENCHMARK_SOURCE/workflow/bwa-blast/bwa-blast-conda-en BWA_THREADS=16 SAMTOOLS_THREADS=16 BLAST_THREADS=16 +BLASTDB=$INPUT_DATA_ROOT_DIR/blast-bwa/blastdata export BWA_BLAST_CONDA_ENV export BWA_BLASTCONDA_ENV_SPEC +export BLASTDB