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Commit e87fc1d

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Suraj Mishra
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removed unused EOMES segmentation loading condition check
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EMT_data_analysis/analysis_scripts/Nuclei_localization.py

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -53,10 +53,8 @@ def nuclei_localization(
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# load segmetnations and meshes
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if df['Gene'].values[0] == 'HIST1H2BJ':
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seg_path = df['H2B Nuclear Segmentation URL'].values[0]
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elif df['Gene'].values[0] == 'EOMES|TBR2':
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seg_path = df['EOMES Nuclear Segmentation URL'].values[0]
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else:
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raise ValueError(f"The move {data_id} does not have EOMES or H2B segmentations")
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raise ValueError(f"The move {data_id} does not have H2B segmentations")
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# import pdb; pdb.set_trace()
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segmentations = BioImage(seg_path)

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