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1 parent 99ed273 commit e87fc1dCopy full SHA for e87fc1d
EMT_data_analysis/analysis_scripts/Nuclei_localization.py
@@ -53,10 +53,8 @@ def nuclei_localization(
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# load segmetnations and meshes
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if df['Gene'].values[0] == 'HIST1H2BJ':
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seg_path = df['H2B Nuclear Segmentation URL'].values[0]
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- elif df['Gene'].values[0] == 'EOMES|TBR2':
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- seg_path = df['EOMES Nuclear Segmentation URL'].values[0]
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else:
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- raise ValueError(f"The move {data_id} does not have EOMES or H2B segmentations")
+ raise ValueError(f"The move {data_id} does not have H2B segmentations")
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# import pdb; pdb.set_trace()
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segmentations = BioImage(seg_path)
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