Tests

Unsqueeze along dimension 1 instead of 2 in Diff AE `generate_from_latent` #855

	name: Tests

	on:
	pull_request:
	branches: [main, "release/*"]
	workflow_dispatch:

	# Cancel actions when new commits are pushed to PR
	concurrency:
	group: ${{ github.ref }}
	cancel-in-progress: true

	jobs:
	test:
	runs-on: ${{ matrix.os }}
	timeout-minutes: 70
	strategy:
	fail-fast: false
	matrix:
	#os: [ubuntu-latest, macOS-latest, windows-latest]
	os: [ubuntu-latest, windows-latest]
	python-version: [3.9, "3.10", "3.11"]
	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	use-mamba: true

	- name: Install dependencies
	shell: bash -el {0}
	run: \|
	conda activate test
	conda install -c conda-forge -n test fortran-compiler blas-devel
	pip install greenlet
	pip install --no-deps -r requirements/test-requirements.txt
	pip install .

	- name: List dependencies
	shell: bash -el {0}
	run: \|
	python -m pip list

	- name: Run pytest
	shell: bash -el {0}
	run: \|
	python -m pytest -v

	# upload code coverage report
	code-coverage:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout
	uses: actions/checkout@v3

	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: "3.10"

	- name: Install dependencies
	shell: bash -el {0}
	run: \|
	conda activate test
	conda install -c conda-forge -n test pip fftw gfortran blas-devel
	pip install --no-deps -r requirements/test-requirements.txt
	pip install .

	- name: Run tests and collect coverage
	shell: bash -el {0}
	run: pytest --cov cyto_dl

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3

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