diff --git a/README.md b/README.md
index 97749093..fbd7004a 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,6 @@
 # Colony context and size-dependent compensation mechanisms give rise to variations in nuclear growth trajectories
+The `dev` branch reflects the most up to date version of this analysis. To exactly reproduce the analysis as seen in bioRxiv manuscript use the `bioRxiv-v1`.
+
 The code in this repository generates all of the figures for Dixon et al. 2024 [(bioRxiv)](https://www.biorxiv.org/content/10.1101/2024.06.28.601071v1). It is primarily intended to support reproducibility of our research. In addition, researchers may find parts of this code valuable for future work.
 
 
diff --git a/nuc_morph_analysis/lib/preprocessing/all_datasets.py b/nuc_morph_analysis/lib/preprocessing/all_datasets.py
index d222c4c1..cef89769 100644
--- a/nuc_morph_analysis/lib/preprocessing/all_datasets.py
+++ b/nuc_morph_analysis/lib/preprocessing/all_datasets.py
@@ -23,7 +23,7 @@
         # FMS ID for 2024-07-08_main_manifest.parquet generated from morflowgenesis v0.3.0
         # with generate_main_manifest.py at commit 6e9eb0962343113ab3999ce6b59d8331ddab9a45
         "fmsid": "443ac819f633494f936ff410c14c21ed",  # morflowgenesis v0.3.0 updated with new density from watershed PR (9/19/24)
-        "s3_path": INTERMEDIATE_MANIFEST_DIR / "2024-06-25_baseline_intermediate_manifest.parquet",
+        "s3_path": INTERMEDIATE_MANIFEST_DIR / "2024-09-19_baseline_intermediate_manifest.parquet",
         "pixel_size": PIXEL_SIZE_YX_100x,
         "time_interval": 5,  # min
         "length_threshold": 10.0,  # hours,
@@ -37,7 +37,7 @@
         # with generate_perturbation_manifest.py at commit ebe76b5e84c9ca24617e4d04aed8acc1c2c3bb62
         "fmsid": "f95429aa9d084a699d9e591afd2f7792",  # morflowgenesis v 0.3.0 updated with new density from density_calc PR (12/5/24)
         "s3_path": INTERMEDIATE_MANIFEST_DIR
-        / "2024-06-14_feeding_control_intermediate_manifest.parquet",
+        / "2024-12-05_feeding_control_intermediate_manifest.parquet",
         "pixel_size": PIXEL_SIZE_YX_100x,
         "time_interval": 5,  # min
         "length_threshold": 10.0,  # hours,
@@ -51,7 +51,7 @@
         # with generate_perturbation_manifest.py at commit 725ed45a6413391b9927610649e6209c04bcae9f
         "fmsid": "5e8170e7881a4ad09c236e3e0c056d75",  # morflowgenesis v 0.3.0 updated with new density from density_calc PR (12/5/24)
         "s3_path": INTERMEDIATE_MANIFEST_DIR
-        / "2024-06-24_inhibitor_perturbation_intermediate_manifest.parquet",
+        / "2024-12-05_inhibitor_perturbation_intermediate_manifest.parquet",
         "pixel_size": PIXEL_SIZE_YX_100x,
         "time_interval": 5,  # min
         "length_threshold": 10.0,  # hours,