Merge pull request #222 from AllenNeuralDynamics/seanf

Fixed missing transformer transpose helper in detection

Author: seanfite-alleninstitute

Rhapso/detection/view_transform_models.py

@@ -41,6 +41,9 @@ def _parse_affine_3x4(affine_text: Any, *, view_id: str) -> np.ndarray:
         m[:3, :4] = vals.reshape(3, 4)
         return m
 
+    def _view_id(self, timepoint: Any, setup: Any) -> str:
+        return f"timepoint: {timepoint}, setup: {setup}"
+
     def compose_all_view_transforms(self) -> None:
         """
         Compose a per-view 4x4 by chaining all affine transforms in order.

Rhapso/pipelines/ray/local/alignment_pipeline.py

@@ -9,7 +9,7 @@
 ray.init()
 
 # Point to param file
-with open("Rhapso/pipelines/ray/param/alignment/HCR_831986.yml", "r") as file:
+with open("Rhapso/pipelines/ray/param/alignment/exaSPIM_720164.yml", "r") as file:
     config = yaml.safe_load(file)
 
 # -- INITIALIZE EACH COMPONENT --