Changes to pass interrogate

Author: hannalee2

parallax/coords_converter.py

@@ -1,4 +1,7 @@
-
+"""
+This module provides a class for converting between local and global coordinates
+using transformation matrices and scale factors.
+"""
 import logging
 import numpy as np
 from typing import Optional
@@ -9,6 +12,10 @@
 
 
 class CoordsConverter:
+    """
+    Converts between local and global coordinates using transformation matrices
+    and scale factors. It also applies reticle adjustments for specific reticles.
+    """
     def __init__(self, model):
         """Initialize the CoordsConverter class."""
         self.model = model
@@ -189,10 +196,4 @@ def _apply_reticle_adjustments(self, global_pts: np.ndarray, reticle: str) -> np
             global_pts = global_pts @ reticle_rotmat.T
         global_pts = global_pts + reticle_offset
 
-        """
-        global_x = np.round(global_pts[0], 1)
-        global_y = np.round(global_pts[1], 1)
-        global_z = np.round(global_pts[2], 1)
-        return np.array([global_x, global_y, global_z])"
-        """
         return np.round(global_pts, 1)

parallax/stage_http_server.py

@@ -1,3 +1,7 @@
+"""
+This module provides a StageHttpServer class that manages an HTTP server for controlling
+and querying the state of a stage controller. It uses aiohttp for asynchronous handling of HTTP requests.
+"""
 import logging
 import json
 import asyncio
@@ -16,6 +20,7 @@ class StageHttpServer(QObject):
     """Manages the Stage HTTP Server using aiohttp (Fully Async)"""
 
     def __init__(self, model, stages_info, port=8081):
+        """Initialize the StageHttpServer with a model, stages_info, and port."""
         super().__init__()
         self.model = model
         self.stage_controller = StageController(self.model)

parallax/stage_listener.py

@@ -2,7 +2,6 @@
 Provides classes to manage stage data fetching, representation, and updates in microscopy
 applications, using PyQt5 for threading and signals, and requests for HTTP requests.
 """
-
 import os
 import json
 import logging
@@ -550,6 +549,10 @@ def _get_stage_info_json(self, stage):
 
         # Convert to mm and round to 4 decimal places if the value is not None
         def convert_and_round(value):
+            """Convert the value from um to mm and round it to 4 decimal places.
+            Args: value (float): The value in um.
+            Returns: float: The value in mm rounded to 4 decimal places.
+            """
             return round(value * 0.001, 4) if value is not None else None
 
         stage_data = {