Chloroplot/test_parameters.R at main · AmiryousefiLab/Chloroplot · GitHub

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plot.tables = t
save = FALSE
file.type = "pdf"
text.size = 1
height = c(0.1, 0.2, 0.07)
file.name = NULL
shadow = TRUE
ir.gc = TRUE
gc.per.gene = TRUE
pseudo = TRUE
legend = TRUE
ssc.converse = FALSE
genome.length = TRUE
total.gc = TRUE
gene.no = TRUE
rrn.no = TRUE
trn.no = TRUE
background = "grey90"
gc.color = "grey30"
gc.background = "grey70"
info.background = "black"
ir.color = "#2F3941"
ssc.color = "#82B6E2"
lsc.color = "#299E96"
shadow.color = "#0000FF20"
psa.color = "#2A6332"
psb.color = "#4C8805"
pet.color = "#7F992C"
atp.color = "#9FBB3D"
ndh.color = "#FEEE50"
rbc.color = "#4D9E3F"
rpo.color = "#AE2D29"
rsp.color = "#D6AD7C"
rpl.color = "#9C7A4B"
clp_mat_inf.color = "#D9662D"
ycf.color = "#71B8A9"
trn.color = "#172C7F"
rrn.color = "#D1382A"
other_gene.color = "#7D7D7D"
cu.bias = TRUE
customize.ring1 = NULL
customize.ring1.type = "line"
customize.ring2 = NULL
customize.ring2.type = "line"
customize.ring3 = NULL