pandera/.github/workflows/ci-tests.yml at main · AndrejIring/pandera · GitHub

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name: CI Tests
on:
  push:
    branches:
      - main
      - dev
      - bugfix
      - "release/*"
  pull_request:
    branches:
      - main
      - dev
      - ibis-dev
      - bugfix
      - "release/*"

env:
  DEFAULT_PYTHON: 3.11
  CI: "true"

concurrency:
  group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}'
  cancel-in-progress: true

jobs:

  lint:
    name: Linters (${{ matrix.python-version }})
    runs-on: ubuntu-latest
    strategy:
      fail-fast: true
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
    defaults:
      run:
        shell: bash -l {0}

    steps:
      - uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - uses: actions/cache@v4
        with:
          path: ~/.cache/pip  # ubuntu location
          key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }}
          restore-keys: |
            ${{ runner.os }}-pip-
      - name: Install dependencies
        run: |
          python -m pip install 'uv<0.7.0' nox pre_commit \
            mypy==0.982 \
            types-click \
            types-pytz \
            types-pyyaml \
            types-requests \
            types-setuptools \
            setuptools \
            polars
      - name: Install pandera
        run: python -m pip install -e .
      - name: Pip info
        run: python -m pip list

      - name: Testing
        run: which uv

      - name: Testing 2
        run: which nox

      - name: Check requirements
        run: nox -db uv -r --non-interactive --python ${{ matrix.python-version }} --session requirements-${{ matrix.python-version }}

      - name: Sort Imports
        run: pre-commit run isort --all-files

      - name: Black
        if: always()
        run: pre-commit run black --all-files

      - name: Pylint
        if: always()
        run: pre-commit run pylint --all-files

      - name: Mypy Type Checking
        if: always()
        run: pre-commit run mypy --all-files

  # test base functionality
  unit-tests-base:
    name: >
      Unit Tests Base: python-${{ matrix.python-version }} ${{ matrix.os }} (pydantic-${{ matrix.pydantic-version }})
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: pwsh
    env:
      PYTHONUTF8: 1
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, windows-latest, macos-latest]
        python-version: ["3.9", "3.10", "3.11", "3.12"]
        pydantic-version: ["2.10.6"]
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dev deps
        shell: bash
        run: pip install 'uv<0.7.0' nox
      - run: |
          pip list
          printenv | sort
      - name: Unit Tests Base
        run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra=None, pandas=None, pydantic=None)"
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4

  # test pandas functionality
  unit-tests-pandas:
    name: >
      Unit Tests Pandas: python-${{ matrix.python-version }} ${{ matrix.os }} (extra-pandas, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }})
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: pwsh
    env:
      PYTHONUTF8: 1
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, windows-latest, macos-latest]
        python-version: ["3.9", "3.10", "3.11", "3.12"]
        pandas-version: ["2.1.1", "2.2.3"]
        pydantic-version: ["1.10.11", "2.10.6"]
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dev deps
        shell: bash
        run: pip install 'uv<0.7.0' nox
      - run: |
          pip list
          printenv | sort
      - name: Unit Tests - pandas
        run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra='pandas', pandas='${{ matrix.pandas-version }}', pydantic='${{ matrix.pydantic-version }}')"
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4

  # test extras that add functionality to core pandera features
  unit-tests-supplemental-extras:
    name: >
      Unit Tests Supplemental Extras: python-${{ matrix.python-version }} ${{ matrix.os }} (extra-${{ matrix.extra }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }})
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: pwsh
    env:
      PYTHONUTF8: 1
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, windows-latest, macos-latest]
        python-version: ["3.9", "3.10", "3.11", "3.12"]
        pandas-version: ["2.2.3"]
        pydantic-version: ["2.10.6"]
        extra:
        - hypotheses
        - io
        - mypy
        - strategies
        - fastapi
        - geopandas
        exclude:
        - extra: mypy
          os: windows-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dev deps
        shell: bash
        run: pip install 'uv<0.7.0' nox
      - run: |
          pip list
          printenv | sort
      - name: Unit Tests - ${{ matrix.extra }}
        run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra='${{ matrix.extra }}', pandas='${{ matrix.pandas-version }}', pydantic='${{ matrix.pydantic-version }}')"
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4

  # test extras for popular dataframe libraries
  unit-tests-dataframe-extras:
    name: >
      Unit Tests DataFrame Extras: python-${{ matrix.python-version }} ${{ matrix.os }} (extra-${{ matrix.extra }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }})
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: pwsh
    env:
      PYTHONUTF8: 1
      PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append
      HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, windows-latest, macos-latest]
        python-version: ["3.9", "3.10", "3.11", "3.12"]
        pandas-version: ["2.2.3"]
        pydantic-version: ["2.10.6"]
        extra:
        - dask
        - polars
        - pyspark
        - modin-dask
        - modin-ray
        - ibis
        exclude:
        # mypy tests hang on windows
        - extra: mypy
          os: windows-latest
        - extra: modin-ray
          os: windows-latest
        # pyspark serialization issue on windows: "pandas" module not found
        - extra: pyspark
          os: windows-latest
        - extra: pyspark
          python-version: 3.12

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-java@v4
        with:
          distribution: "zulu"
          java-version: "17"

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dev deps
        shell: bash
        run: pip install 'uv<0.7.0' nox

      - run: |
          pip list
          printenv | sort

      - name: Unit Tests - ${{ matrix.extra }}
        run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra='${{ matrix.extra }}', pandas='${{ matrix.pandas-version }}', pydantic='${{ matrix.pydantic-version }}')"

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4

  docs:
    name: Docs (${{ matrix.python-version }})
    runs-on: ubuntu-latest
    strategy:
      fail-fast: true
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
    defaults:
      run:
        shell: bash -l {0}

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-java@v4
        with:
          distribution: "zulu"
          java-version: "17"

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - uses: actions/cache@v4
        with:
          path: ~/.cache/pip  # ubuntu location
          key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }}
          restore-keys: |
            ${{ runner.os }}-pip-
      - name: Install dependencies
        run: pip install 'uv<0.7.0' nox
      - name: Pip info
        run: python -m pip list

      - name: Build docs and run doctest
        run: >
          nox
          -db uv -r
          --non-interactive
          --session docs-${{ matrix.python-version }}