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Use of Salmon leads to non-deterministic reports #17

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rekado opened this issue Jan 18, 2018 · 1 comment
Open

Use of Salmon leads to non-deterministic reports #17

rekado opened this issue Jan 18, 2018 · 1 comment
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@rekado @borauyar
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rekado commented Jan 18, 2018

Salmon output depends on random numbers. The random number generator seeds cannot be set by the user:

https://github.com/COMBINE-lab/salmon/issues/185

Kallisto would be a viable alternative as it does allow users to set the seed, but it is missing a feature that Salmon provides:

https://github.com/pachterlab/kallisto/issues/154
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Use of Salmon leads to non-deterministic reports

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