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src/bcif.jl

Lines changed: 7 additions & 10 deletions
Original file line numberDiff line numberDiff line change
@@ -8,17 +8,14 @@ import MsgPack
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A function to read a binary CIF file from MolStar and extract the list of attributes and their compressed bytes.
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"""
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# currently isn't implementing the dssp / stride. If using BCIF it seems strange to write
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# out a .pdb, run dssp / string, then read it back in again.
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function Base.read(input::IO,
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::Type{BCIFFormat},
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structure_name::AbstractString="",
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remove_disorder::Bool=false,
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read_std_atoms::Bool=true,
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read_het_atoms::Bool=true,
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run_dssp::Bool=false,
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run_stride::Bool=false)
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::Type{BCIFFormat};
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structure_name::AbstractString="",
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remove_disorder::Bool=false,
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read_std_atoms::Bool=true,
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read_het_atoms::Bool=true,
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run_dssp::Bool=false,
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run_stride::Bool=false)
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file = MsgPack.unpack(read(input))
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categories = file["dataBlocks"][1]["categories"]

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