linting: remove print statements from tests

Author: a-r-j

tests/mmcif/test_read_mmcif.py

@@ -11,6 +11,7 @@
     import importlib.resources as pkg_resources
 else:
     import importlib_resources as pkg_resources
+
 from pathlib import Path
 from urllib.error import HTTPError
 
@@ -97,7 +98,6 @@ def test__read_pdb():
     """Test private _read_pdb"""
     ppdb = PandasMmcif()
     _, txt = ppdb._read_mmcif(TESTDATA_FILENAME)
-    print(txt)
     assert txt == three_eiy
 
 
@@ -336,9 +336,7 @@ def test_mmcif_pdb_conversion():
     )
     assert_frame_equal(
         pdb.df["HETATM"].drop(columns=["line_idx"]),
-        mmcif_pdb.df["HETATM"]
-        .drop(columns=["line_idx"])
-        .reset_index(drop=True),
+        mmcif_pdb.df["HETATM"].drop(columns=["line_idx"]).reset_index(drop=True),
     )
 
     # single chain test
@@ -352,7 +350,5 @@ def test_mmcif_pdb_conversion():
     )
     assert_frame_equal(
         pdb.df["HETATM"].drop(columns=["line_idx"]),
-        mmcif_pdb.df["HETATM"]
-        .drop(columns=["line_idx"])
-        .reset_index(drop=True),
+        mmcif_pdb.df["HETATM"].drop(columns=["line_idx"]).reset_index(drop=True),
     )

tests/mmtf/test_write_mmtf.py

@@ -20,7 +20,6 @@ def test_write_mmtf_bp():
         "1rcf",
     ]
     for pdb in PDB_CODES:
-        print(pdb)
         pm1 = PandasMmtf().fetch_mmtf(pdb)
         pm1.to_mmtf("test.mmtf")
         assert os.path.exists("test.mmtf")
@@ -51,7 +50,6 @@ def test_write_mmtf():
         "1rcf",
     ]
     for pdb in PDB_CODES:
-        print(pdb)
         pm1 = PandasMmtf().fetch_mmtf(pdb)
         write_mmtf(pd.concat([pm1.df["ATOM"], pm1.df["HETATM"]]), "test.mmtf")
         assert os.path.exists("test.mmtf")

tests/pdb/test_amino3to1.py

@@ -159,7 +159,6 @@ def test_sameindex():
     TESTDATA_1t48 = str(TEST_DATA.joinpath("1t48_995.pdb"))
     p1t48 = PandasPdb()
     p1t48.read_pdb(TESTDATA_1t48)
-    print(p1t48)
     p1t48.df["ATOM"].index = np.zeros(p1t48.df["ATOM"].shape[0], dtype=int)
 
     expect_res = [
@@ -490,12 +489,8 @@ def test_multichain():
     expect_chain = ["A" for _ in range(88)] + ["B" for _ in range(94)]
     got_chain = list(transl["chain_id"].values)
 
-    got_res_a = list(
-        transl.loc[transl["chain_id"] == "A", "residue_name"].values
-    )
-    got_res_b = list(
-        transl.loc[transl["chain_id"] == "B", "residue_name"].values
-    )
+    got_res_a = list(transl.loc[transl["chain_id"] == "A", "residue_name"].values)
+    got_res_b = list(transl.loc[transl["chain_id"] == "B", "residue_name"].values)
 
     assert expect_chain == got_chain
     assert expect_res_a == got_res_a

tests/pdb/test_read_pdb.py

@@ -11,6 +11,7 @@
     import importlib.resources as pkg_resources
 else:
     import importlib_resources as pkg_resources
+
 from urllib.error import HTTPError
 
 import numpy as np
@@ -94,8 +95,7 @@
 def test__read_pdb():
     """Test private _read_pdb"""
     ppdb = PandasPdb()
-    path, txt = ppdb._read_pdb(TESTDATA_FILENAME)
-    print(txt)
+    _, txt = ppdb._read_pdb(TESTDATA_FILENAME)
     assert txt == three_eiy
 
 
@@ -104,8 +104,7 @@ def test__read_pdb_raises():
     Test if ValueError is raised for wrong file formats."""
 
     expect = (
-        "Wrong file format; allowed file formats are "
-        ".pdb, .pdb.gz, .ent, .ent.gz"
+        "Wrong file format; allowed file formats are " ".pdb, .pdb.gz, .ent, .ent.gz"
     )
 
     def run_code_1():