Fix typos (#174)

Author: Bisaloo

build-check-bioccheck.Rmd

@@ -7,7 +7,7 @@ version.
 
 
 The package should `R CMD build`, `R CMD check`, and `BiocCheck` without ERROR.
-See useful tools like [devools][] and [BiocCheck][] for more information.
+See useful tools like [devtools][] and [BiocCheck][] for more information.
 
 
 As Bioconductor moves towards integration with

docs/package-review-checklist.md

@@ -44,7 +44,7 @@ Example: Seurat and data.frames are not Bioconductor classes. Packages certainly
 may keep this interoperability and generality but they should also be able to work
 _directly_ with the equivalent Bioconductor class in this case likely a SummarizedExperiment or
 SingleCellExperiment (maybe with a designed wrapper function, e.g). The majority
-of documentation and runnable code should emphasize/demonstarte the interaction
+of documentation and runnable code should emphasize/demonstrate the interaction
 with Bioconductor objects (it may be in addition to the others capabilities).
 
 
@@ -73,7 +73,7 @@ Refer to the [DESCRIPTION](https://contributions.bioconductor.org/description.ht
 - [ ] `URL` field.
 - [ ] `Video` field. Optional.
 - [ ] `Collate` field. Optional.
-- [ ] `BiocType` field. (one of: Softare, ExperimentData, Annotation, Workflow, Book)
+- [ ] `BiocType` field. (one of: Software, ExperimentData, Annotation, Workflow, Book)
 - [ ] `Config/Bioconductor/UnsupportedPlatforms`. Optional. If package designed NOT to work on a specific OS
 - [ ] Use of Remotes is NOT allowed. All packages must be on CRAN/Bioconductor
 
@@ -92,7 +92,7 @@ strongly encouraged. Using both Authors@R and Maintainer/Author is not allowed!
 - [ ] Selective imports using `importFrom` instead of *import all* with `import`. Except where appropriate (like class structures and extensions or heavily utilized packages)
 - [ ] Individual functions/methods are exported instead of regular expression matching all.
 - [ ] NAMESPACE and DESCRIPTION Depends/Imports/Suggests/Enhances consistency.
-- [ ] Avoid names of packages, functions, and classes that already exist in Bioconductor infrastrure or could be easily confused
+- [ ] Avoid names of packages, functions, and classes that already exist in Bioconductor infrastructure or could be easily confused
 
 ## The NEWS file
 

documentation.Rmd

@@ -82,7 +82,7 @@ the order that they are displayed on the package homepage and when the
 `browseVignettes()` function is called. Vignettes will show up in
 alphabetical order, which may not be a logical ordering without
 further specification. One approach to controlling the order of the
-vignettes is to use a number in the `VignettteIndexEntry` setting,
+vignettes is to use a number in the `VignetteIndexEntry` setting,
 e.g. using numbers `1-9`, if you have a single digit number of
 vignettes, or `01-99` if you have ten or more vignettes. For example,
 the first vignette could specify in the header:
@@ -129,7 +129,7 @@ objective, models, unique functions, key points, etc that distinguish the
 package from other packages in the same area. This is a requirement of
 Bioconductor package vignettes. It should include a short motivation for the
 package in general as well as motivation for inclusion of the package in
-Biconductor. When relevant, a brief review and comparison of packages with
+Bioconductor. When relevant, a brief review and comparison of packages with
 similar functionality or scope should be provided either in the Introduction or
 in a separate dedicated vignette section.
 

index.Rmd

@@ -184,6 +184,6 @@ knitr::write_bib(c(
 [Valgrind]: http://valgrind.org/
 [Xcode]: https://developer.apple.com/xcode/
 
-[devools]: https://devtools.r-lib.org/reference/check.html
+[devtools]: https://devtools.r-lib.org/reference/check.html
 [BiocCheck]: https://www.bioconductor.org/packages/BiocCheck/
 [R-Universe]: https://r-universe.dev/search

unit-tests.Rmd

@@ -215,7 +215,7 @@ Writing unit tests is easy, though your Bioconductor package must be
 set up properly so that `R CMD check MyPackage` finds and run your
 tests.  We take some pains to describe exactly how things should be
 set up, and what is going on behind the scenes.  (See the [next
-section](#r-unit-during-develoment) for the simple technique to use when you
+section](#r-unit-during-development) for the simple technique to use when you
 want to test only a small part of your code).
 
 The standard command `R CMD check MyPackage` sources and runs all R
@@ -251,7 +251,7 @@ There are two steps:
    `MyPackage/inst/unitTests/test_homeBrewArithmetic.R`
 
 
-### Using Tests During Development {#r-unit-during-develoment}
+### Using Tests During Development {#r-unit-during-development}
 
     R CMD check MyPackage