Finish

Author: SeanMcOwen

docs/index.md

@@ -37,13 +37,7 @@ Writing mathematical specifications can be a difficult process, especially when
 ## How does MSML work?
 
 
-```mermaid
-graph TD
-A[JSON Object \n\n Each spec has a repo for tracking changes \n Must conform to the json specification \n Defines all aspects of the spec including blocks, spaces and actions] -->B[MSML Object \n\n JSON file is parsed, with validations and mappings along the way \n Can show different views on the fly]
-    B --> C[Report Outputs & Obsidian Directory \n\n Automatically build reports for the full spec or subviews \n Example: all blocks with an effect on variable XYZ\n Also builds an entire Obsidian directory of all components as linked notes]
-D[Python Function Implementations \n\n Optional enhancement to actually execute code\n Done for each referenced policy option, mechanism, etc. \n Just needs a function definition for each] --> B 
-B --> E[Python Wirings & Simulations \n\n MSML can be used to run blocks \n Wirings automatically work to pass between domain/codomains \n Entire simulations can be built up as composed wirings]
-```
+![mermaid](mermaid.png)
 
 ## MSML in the Engineering Lifecycle
 

docs/mermaid.png

@@ -19,6 +19,7 @@ A total of XX issues were closed out over the development cycle, which broadly f
 - State and parameter preparation function paradigms were added into MSML to allow for setting up parameters and state prior to simulations / executable codes
 - Metrics were added into implementations to allow for mapping code to them
 - Functionality was added in for linking source code to the blocks for easy viewing and writing into markdown reports; as well a source code printing function was added
+- An enhanced version of the components running was created which acts as a wrapper around executable code and checks things like the actual spaces match even when doing the code execution side
 
 ### Metaprogramming
 
@@ -31,6 +32,7 @@ A total of XX issues were closed out over the development cycle, which broadly f
 - Post-processing function paradigm was added into the mini-simulation runner
 - Metric functions were added to the runner for post processing of data
 - Ability to run lists of blocks built out
+- Mapping of parameter changes to columns for experiments was added in
 
 ### Canonical Examples
 
@@ -46,6 +48,10 @@ A total of XX issues were closed out over the development cycle, which broadly f
 - A research note on parameter class names and different ways that it could be implemented (plan is for a "bring your own ontology" approach moving forward)
 - Development note on working through an issue with Latex escape characters
 - Development research note for future proposals of changes to MSML
+- Predator-Prey-Ideation through reverse engineering research note
+- Multi-processing research note for aiding with cadCAD performance (and eventual dogfooding on MSML)
+- V0.5 release plan was created
+- V0.4 update note was created
 
 ## Improvements and Convenience Functions
 
@@ -56,6 +62,15 @@ A total of XX issues were closed out over the development cycle, which broadly f
 - Improvements of assertions
 - An automatic README writer was added in
 - A functionality that automatically writes issues from an MSML scaffold into a github issues was built out
+- Large amount of small updates to the reporting sections
+- Functionality was added which puts the actual bound code into the markdown reports and also adds links to both the definitions of code as well as the spec component definitions for making it easier to develop
+- Depth of 1 mermaid wiring charts were created to make it cleaner to look at different wirings
+- The nodes in mermaid graphics are now clickable and bring you to the Obsidian note for that component
+- Automated github table creation functionality for project management improvement
+- Full issue inventory and tagging of all 200 issues within the MSML repository
+- The remove starter repo functionality was refactored for the new MSML template
+- The official [MSML documentation](https://blockscience.github.io/MSML/) has been launched
+- A getting started guide was built
 
 ## Presentations