From 1b4d2742600690cc77f311e0c29cc65559350d57 Mon Sep 17 00:00:00 2001 From: BenSchZA Date: Thu, 25 Jun 2026 00:13:55 +0200 Subject: [PATCH] Resolve dependabot alerts by dropping support for Python 3.8 and 3.9 --- .github/workflows/python.yml | 9 +- README.md | 2 +- docs/index.md | 2 +- docs/tutorials/installation.md | 2 +- .../streamlit/game_of_life/requirements.txt | 132 +- noxfile.py | 2 +- pyproject.toml | 37 +- requirements.txt | 6 +- uv.lock | 3404 +++++++---------- 9 files changed, 1505 insertions(+), 2091 deletions(-) diff --git a/.github/workflows/python.yml b/.github/workflows/python.yml index 113fb87..02b7d41 100644 --- a/.github/workflows/python.yml +++ b/.github/workflows/python.yml @@ -15,17 +15,12 @@ on: jobs: build: - # `macOS-latest` is arm64 (macos-14+). PyTables only ships macOS arm64 - # wheels from 3.10.1 (Python 3.10+); Python 3.8/3.9 use older `tables` with - # x86_64-only wheels, so route those to the Intel `macos-13` runner to avoid - # a source build. Python 3.10+ runs on arm64. Ubuntu and Windows keep - # `*-latest`. - runs-on: ${{ (matrix.os == 'macOS' && matrix.python-minor-version < 10) && 'macos-13' || format('{0}-latest', matrix.os) }} + runs-on: ${{ format('{0}-latest', matrix.os) }} strategy: fail-fast: false matrix: python-major-version: [3] - python-minor-version: [8, 9, 10, 11, 12] + python-minor-version: [10, 11, 12] os: [ubuntu, macOS, windows] env: python-version: ${{ format('{0}.{1}', matrix.python-major-version, matrix.python-minor-version) }} diff --git a/README.md b/README.md index 21e51ee..f25a401 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ You describe a system as a set of **state transitions** (encoding differential e * **Extensible**: [hooks](https://cadlabs.github.io/radCAD/how-to/use-hooks/), [iterable models](https://cadlabs.github.io/radCAD/how-to/iterate-over-a-model/), and typed [dataclass parameters](https://cadlabs.github.io/radCAD/how-to/use-dataclass-parameters/). * **Robust exception handling**: failed runs return [partial results and tracebacks](https://cadlabs.github.io/radCAD/how-to/handle-exceptions/), so one error won't discard a long-running simulation. * **Distributed execution**: parallel processing across [multiple backends](https://cadlabs.github.io/radCAD/how-to/choose-a-backend/), including [remote Ray clusters](https://cadlabs.github.io/radCAD/how-to/run-on-a-ray-cluster/). -* **Tested**: against Python 3.8–3.12 on Linux, macOS, and Windows. +* **Tested**: against Python 3.10–3.12 on Linux, macOS, and Windows. ## Installation diff --git a/docs/index.md b/docs/index.md index 19262a1..d07ade3 100644 --- a/docs/index.md +++ b/docs/index.md @@ -65,7 +65,7 @@ df = pd.DataFrame(simulation.run()) - **Extensible**: [hooks](how-to/use-hooks.md), [iterable models](how-to/iterate-over-a-model.md), and typed [dataclass parameters](how-to/use-dataclass-parameters.md). - **Robust exception handling**: failed runs return [partial results and tracebacks](how-to/handle-exceptions.md), so one error won't discard a long-running simulation. - **Distributed execution**: parallel processing across [multiple backends](how-to/choose-a-backend.md), including [remote Ray clusters](how-to/run-on-a-ray-cluster.md). -- **Tested**: against Python 3.8–3.12 on Linux, macOS, and Windows. +- **Tested**: against Python 3.10–3.12 on Linux, macOS, and Windows. ## Open-source models using radCAD diff --git a/docs/tutorials/installation.md b/docs/tutorials/installation.md index f657fdc..bb08f11 100644 --- a/docs/tutorials/installation.md +++ b/docs/tutorials/installation.md @@ -4,7 +4,7 @@ In this tutorial you will install radCAD and confirm it runs. ## Requirements -- Python **3.8 – 3.12** +- Python **3.10 – 3.12** - A package manager such as `pip` ## Install from PyPI diff --git a/examples/streamlit/game_of_life/requirements.txt b/examples/streamlit/game_of_life/requirements.txt index 684f106..28917fb 100644 --- a/examples/streamlit/game_of_life/requirements.txt +++ b/examples/streamlit/game_of_life/requirements.txt @@ -1,126 +1,6 @@ -aiohttp==3.7.3 -aiohttp-cors==0.7.0 -aioredis==1.3.1 -altair==4.1.0 -appdirs==1.4.4 -appnope==0.1.2 -argon2-cffi==20.1.0 -astor==0.8.1 -async-generator==1.10 -async-timeout==3.0.1 -attrs==20.3.0 -backcall==0.2.0 -base58==2.1.0 -black==20.8b1 -bleach==3.2.1 -blessings==1.7 -blinker==1.4 -boto3==1.16.54 -botocore==1.19.54 -cachetools==4.2.0 -celluloid==0.2.0 -certifi==2020.12.5 -cffi==1.14.4 -chardet==3.0.4 -click==7.1.2 -colorama==0.4.4 -colorful==0.5.4 -cycler==0.10.0 -decorator==4.4.2 -defusedxml==0.6.0 -dill==0.3.3 -entrypoints==0.3 -filelock==3.0.12 -gitdb==4.0.5 -GitPython==3.1.12 -google-api-core==1.24.1 -google-auth==1.24.0 -googleapis-common-protos==1.52.0 -gpustat==0.6.0 -grpcio==1.34.1 -hiredis==1.1.0 -idna==2.10 -ipykernel==5.4.3 -ipython==7.19.0 -ipython-genutils==0.2.0 -ipywidgets==7.6.3 -jedi==0.18.0 -Jinja2==2.11.3 -jmespath==0.10.0 -jsonschema==3.2.0 -jupyter-client==6.1.11 -jupyter-core==4.7.0 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-Send2Trash==1.5.0 -six==1.15.0 -smmap==3.0.4 -streamlit==0.74.1 -terminado==0.9.2 -testpath==0.4.4 -toml==0.10.2 -toolz==0.11.1 -tornado==6.1 -traitlets==5.0.5 -typed-ast==1.4.2 -typing-extensions==3.7.4.3 -tzlocal==2.1 -urllib3==1.26.5 -validators==0.18.2 -wcwidth==0.2.5 -webencodings==0.5.1 -widgetsnbextension==3.5.1 -yarl==1.6.3 +# Runtime dependencies for the Streamlit Game of Life example +numpy +pandas +matplotlib +streamlit>=1.54.0 +radcad==0.13.0 diff --git a/noxfile.py b/noxfile.py index bc58cfd..f60a243 100644 --- a/noxfile.py +++ b/noxfile.py @@ -3,7 +3,7 @@ import nox # Select the Python versions to test against (these must be installed on the system) -python_versions = ['3.8', '3.9', '3.10', '3.11', '3.12'] +python_versions = ['3.10', '3.11', '3.12'] # Configure radCAD for tests if sys.platform.startswith('win'): diff --git a/pyproject.toml b/pyproject.toml index 9d9a8ac..cdc5ebe 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,57 +5,48 @@ description = "A Python framework for designing, testing, and validating complex authors = [ {name = "CADLabs", email = "benschza@users.noreply.github.com"}, ] -requires-python = ">=3.8, <3.13" +requires-python = ">=3.10, <3.13" dependencies = [ "pathos<1.0.0,>=0.2.7", - "pandas<=2.0.3; python_version < '3.9'", - "pandas>2.0.3; python_version >= '3.9'", + "pandas>2.0.3", "py<2.0.0,>=1.11.0", - "numpy<1.25; python_version < '3.9'", - "numpy<1.26.4,>=1.25; python_version >= '3.9'", + "numpy<1.26.4,>=1.25", "fn-py<1.0.0,>=0.6.0", ] [project.optional-dependencies] compat = [ - "cadCAD<0.5.0; python_version < '3.9'", - "cadCAD>=0.5.0; python_version >= '3.9'", + "cadCAD>=0.5.0", ] extension-backend-ray = [ - "ray<3.0.0,>=2.0.0", + # Ray 2.54+ ships patched wheels, but no macOS x86_64 wheels. + "ray<3.0.0,>=2.54.0; platform_system != 'Darwin' or platform_machine != 'x86_64'", "boto3<2.0.0,>=1.16.43", ] docs = [ "mkdocs-material>=9.5.0", "mkdocstrings[python]>=0.25.0", - "pymdown-extensions>=10.0", - "black>=24.0", # used by mkdocstrings to format rendered signatures + "pymdown-extensions>=10.16.1", + "black>=26.3.1", # used by mkdocstrings to format rendered signatures ] [tool.uv] dev-dependencies = [ - "pytest==8.3.2", + "pytest>=9.0.3", "coveralls<3.0.0,>=2.2.0", "pytest-cov<3.0.0,>=2.10.1", "pytest-benchmark==4.0.0", - "matplotlib<3.8.0; python_version < '3.9'", - "matplotlib>=3.8.0; python_version >= '3.9'", + "matplotlib>=3.8.0", "plotly<5.0.0,>=4.14.1", "ipykernel<7.0,>=6.14", "celluloid<1.0.0,>=0.2.0", "ipywidgets>=7.5", "memory-profiler<1.0.0,>=0.58.0", - "black>=24.0", - "tables<=3.7.0; python_version < '3.9'", - # 3.9 has no macOS arm64 wheel at any version; 3.10.1+ ships arm64 wheels. - "tables>3.8.0,<3.10.0; python_version == '3.9'", - "tables>=3.10.1; python_version >= '3.10'", - # numexpr (a tables dependency) 2.8.6 is the last to support 3.8 but has no - # 3.12 wheels; 2.8.7+ ships 3.12 wheels but requires >=3.9. - "numexpr<=2.8.6; python_version < '3.9'", - "numexpr>=2.8.7; python_version >= '3.9'", + "black>=26.3.1", + "tables>=3.10.1", + "numexpr>=2.8.7", "jupyter<2.0.0,>=1.0.0", - "jupyterlab>=4.0.0", + "jupyterlab>=4.5.7", "jupyter-console<7.0.0,>=6.6.3", ] diff --git a/requirements.txt b/requirements.txt index 39ab72d..eb6c8c5 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,6 +1,6 @@ -# This file is used for Streamlit applications; this project is managed by PDM; see README for further guidance about using pip and generating a requirements.txt file (or just use PDM!) +# This file is used for Streamlit applications; the project itself is managed with uv. numpy -radcad==0.5.3 +radcad==0.13.0 matplotlib -streamlit +streamlit>=1.54.0 pandas diff --git a/uv.lock b/uv.lock index 9735705..7924b51 100644 --- a/uv.lock +++ b/uv.lock @@ -1,42 +1,33 @@ version = 1 -requires-python = ">=3.8, <3.13" +requires-python = ">=3.10, <3.13" resolution-markers = [ - "python_full_version < '3.9'", - "python_full_version < '3.9'", - "python_full_version == 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