release-v090

Author: samcwiley

CHANGELOG.md

@@ -5,12 +5,14 @@ is roughly based on [Keep a Changelog], and this project tries to adheres to
 [Semantic Versioning]. For IRMA vs IRMA-core compatibility, please see the
 [version matrix](VERSION_MATRIX.md).
 
-## [0.9.0] - TBD
+## [0.9.0] - 2026-03-06
 
 ### Added
 
 - Adds `verbose` flag to `sampler` for printing total number of reads in
   original input and number of downsampled records to `stderr`
+- Adds `verbose` flag to `trimmer` for printing diagnostic output on number of
+  reads trimmed to `stderr`
 - Adds `phase` process for phase clustering assignment and labeling of genes
 - Adds more detailed error messages with more context, including file paths for
   many IO errors

Cargo.lock

@@ -1,6 +1,6 @@
 [package]
 name = "irma-core"
-version = "0.9.0-dev"
+version = "0.9.0"
 edition = "2024"
 description = "A tool to aid virus sequencing and accelerating IRMA."
 license = "Apache-2.0"
@@ -18,7 +18,7 @@ readme = "README.md"
 
 
 [dependencies]
-zoe = { git = "https://github.com/CDCgov/zoe.git", default-features = false, features = [
+zoe = { version="0.0.26", default-features = false, features = [
     "multiversion", "rand", "dev-max-score-for-type"
 ] }
 clap = { version = "4", features = ["derive"] }