unify tpv configs into one

we run on homogenous infra and should share the settings

Author: martenson

files/galaxy-qa1.galaxy.cloud.e-infra.cz/tpv_rules_local.yml

@@ -88,7 +88,7 @@ galaxy_job_config:
         tpv_config_files:
           - https://raw.githubusercontent.com/galaxyproject/tpv-shared-database/main/tools.yml
           - "{{ tpv_config_dir }}/tpv_rules_meta.yml"
-          - "{{ tpv_config_dir }}/tpv_rules_{{ inventory_hostname }}.yml"
+          # - "{{ tpv_config_dir }}/tpv_rules_{{ inventory_hostname }}.yml"
   resources:
     default: default
     groups:

files/galaxy-qa2.galaxy.cloud.e-infra.cz/tpv_rules_local.yml

@@ -17,8 +17,6 @@ pulsar:
 galaxy_config_files:
   - src: files/galaxy/themes.yml
     dest: "{{ galaxy_config.galaxy.themes_config_file }}"
-  - src: "files/{{ inventory_hostname }}/tpv_rules_local.yml"
-    dest: "{{ tpv_mutable_dir }}/tpv_rules_{{ inventory_hostname }}.yml"
   - src: "{{ lookup('first_found', ['files/'+inventory_hostname+'/config/tool_conf.xml', 'files/galaxy/config/tool_conf.xml']) }}"
     dest: "{{ galaxy_config_dir }}/tool_conf.xml"
   - src: files/galaxy/config/oidc_config.xml

files/galaxy-umsa.grid.cesnet.cz/tpv_rules_local.yml

@@ -16,8 +16,6 @@ pulsar:
 galaxy_config_files:
   - src: files/galaxy/themes.yml
     dest: "{{ galaxy_config.galaxy.themes_config_file }}"
-  - src: "files/{{ inventory_hostname }}/tpv_rules_local.yml"
-    dest: "{{ tpv_mutable_dir }}/tpv_rules_{{ inventory_hostname }}.yml"
   - src: files/{{ inventory_hostname }}/file_sources_conf.yml
     dest: "{{ galaxy_config_dir }}/file_sources_conf.yml"
   - src: files/{{ inventory_hostname }}/user_preferences_extra_conf.yml

files/usegalaxy.cz/tpv_rules_local.yml

@@ -31,8 +31,6 @@ pulsar:
 galaxy_config_files:
   - src: files/galaxy/themes.yml
     dest: "{{ galaxy_config.galaxy.themes_config_file }}"
-  - src: "files/{{ inventory_hostname }}/tpv_rules_local.yml"
-    dest: "{{ tpv_mutable_dir }}/tpv_rules_{{ inventory_hostname }}.yml"
   - src: "{{ lookup('first_found', ['files/'+inventory_hostname+'/config/tool_conf.xml', 'files/galaxy/config/tool_conf.xml']) }}"
     dest: "{{ galaxy_config_dir }}/tool_conf.xml"
   - src: files/galaxy/config/oidc_config.xml

group_vars/galaxyservers.yml

@@ -26,8 +26,6 @@ pulsar:
 galaxy_config_files:
   - src: files/galaxy/themes.yml
     dest: "{{ galaxy_config.galaxy.themes_config_file }}"
-  - src: "files/{{ inventory_hostname }}/tpv_rules_local.yml"
-    dest: "{{ tpv_mutable_dir }}/tpv_rules_{{ inventory_hostname }}.yml"
   - src: "{{ lookup('first_found', ['files/'+inventory_hostname+'/config/tool_conf.xml', 'files/galaxy/config/tool_conf.xml']) }}"
     dest: "{{ galaxy_config_dir }}/tool_conf.xml"
   - src: files/galaxy/config/oidc_config.xml

host_vars/galaxy-qa1.galaxy.cloud.e-infra.cz/vars.yml

@@ -18,6 +18,7 @@ tools:
         - pulsar
       reject:
         - offline
+        - docker
     rules: []
     rank: |
       helpers.weighted_random_sampling(candidate_destinations)
@@ -43,15 +44,15 @@ tools:
     gpus: 1
     context:
       walltime: 24
-      scratch: 25 
+      scratch: 25
       gpu_mem: 16
-    scheduling:   
+    scheduling:
       require:
         - rosettafold
 
   rosettafold2:
     inherits: testing_rosettafold2
-    scheduling:   
+    scheduling:
       require:
         - singularity
 
@@ -109,6 +110,61 @@ tools:
       walltime: 96
       scratch: 100
 
+  .*/abims_xcms_fillPeaks/.*:
+    context:
+      walltime: 96
+
+  .*/tp_cut_tool/.*:
+    mem: 1
+
+  .*/mfassignr_mfassign.*:
+    mem: 16
+    context:
+      walltime: 48
+
+  .*/mfassignr_mfassignCHO/.*:
+    mem: 32
+
+  .*/mfassignr_isofiltr/.*:
+    mem: 32
+
+  .*/recetox_aplcms_align_features/.*:
+    mem: 150
+    cores: 8
+    context:
+      walltime: 72
+
+  .*/recetox_aplcms_compute_clusters/.*:
+    cores: 1
+    mem: 16
+
+  .*/recetox_aplcms_remove_noise/.*:
+    cores: 1
+    mem: 10
+
+  .*/recetox_aplcms_generate_feature_table/.*:
+    mem: 4
+
+  .*/ms2deepscore_training/.*:
+    mem: 16
+
+  .*/target_screen/.*:
+    mem: 16
+
+  .*/fastqc/.*:
+    cores: 1
+    context:
+      walltime: 2
+
+  .*/qcxms_neutral_run/.*:
+    mem: 32
+
+  .*/qcxms_production_run/.*:
+    mem: 8
+
+  .*/recetox_msfinder/.*:
+    mem: 16
+
   __SET_.*:
     inherits: local_running_tools