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1 parent 9ab7b62 commit aa1f057Copy full SHA for aa1f057
bl2aln.c
@@ -30,7 +30,7 @@ double min_id;
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void initenv(int argc, char **argv);
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-main(int argc, char **argv)
+int main(int argc, char **argv)
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{
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int i, j, k, l, m, n;
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char **src_seq, **src_name;
@@ -74,6 +74,8 @@ main(int argc, char **argv)
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printf("Done...\n");
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free((void **) align);
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+
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+ return 0;
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}
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void initenv(int argc, char **argv)
repeat_sin.c
@@ -30,7 +30,7 @@ char inpfile[100], outfile[100], seqfile[100];
int dist[20];
@@ -66,10 +66,15 @@ main(int argc, char **argv)
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fp = ckopen(seqfile, "r");
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num_seq = readseq1by1(src_seq, src_name, len_seq, fp);
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fclose(fp);
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+ sprintf(temp, "%s.len", seqfile);
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+ fp = ckopen(temp, "w");
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printf("Genome length: ");
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for(i = 0; i < num_seq; i ++) {
printf("%d ", len_seq[i]);
+ fprintf(fp, "%d\n", len_seq[i]);
+ fclose(fp);
printf("\n");
/* Make reverse complements of input sequences rev(i) --> i + num_seq */
@@ -322,6 +327,8 @@ main(int argc, char **argv)
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free((void **) src_seq);
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free((void **) src_name);
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free((void *) len_seq);
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