From 52943418d188e7b246ccc9df966f31300fb91cda Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Mon, 9 Oct 2023 22:02:39 +0800 Subject: [PATCH 01/10] build(ci): only build docker for release branch --- .github/workflows/autobuild-docker.yml | 56 -------------------------- 1 file changed, 56 deletions(-) delete mode 100644 .github/workflows/autobuild-docker.yml diff --git a/.github/workflows/autobuild-docker.yml b/.github/workflows/autobuild-docker.yml deleted file mode 100644 index d2a6135a..00000000 --- a/.github/workflows/autobuild-docker.yml +++ /dev/null @@ -1,56 +0,0 @@ -name: burni-build-docker -on: - push: - branches: - - "main" - tags: - - "*" -jobs: - publish_docker_image: - runs-on: ubuntu-20.04 - steps: - - - name: Checkout - uses: actions/checkout@v3 - - - name: Setup node - uses: actions/setup-node@v3 - with: - node-version: '14' - - - name: burni Generate Source Code - run: | - npm install --only=production - node ./config/generate-config-allResources.js - cp ./.env.template ./.env - npm run build - - - name: Set up QEMU - uses: docker/setup-qemu-action@v1 - - - name: Set up Docker Buildx - uses: docker/setup-buildx-action@v1 - - - name: Login to DockerHub - uses: docker/login-action@v1 - with: - username: ${{ secrets.DOCKERHUB_USERNAME }} - password: ${{ secrets.DOCKERHUB_TOKEN }} - - - name: Docker meta - id: meta - uses: docker/metadata-action@v3 - with: - images: a5566qq123/burni - tags: | - type=semver,pattern={{raw}} - type=ref,event=branch - type=raw,value=latest - - - name: Build and push - uses: docker/build-push-action@v2 - with: - context: ./ - push: ${{ github.event_name != 'pull_request' }} - tags: ${{ steps.meta.outputs.tags }} - labels: ${{ steps.meta.outputs.labels }} From f396f791950fbf76e0a4fdfdaf6ce9609974a224 Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Tue, 10 Oct 2023 10:35:39 +0800 Subject: [PATCH 02/10] docs: add touchstone basic server version 23 test result --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index a097b1a0..3e1e928c 100644 --- a/README.md +++ b/README.md @@ -11,6 +11,7 @@ ## Conformance Statement Burni has been tested by AEGIS Touchstone Basic-R4-Server. The conformance results show below: +* [FHIR4-0-1-Basic-Server version 23](https://touchstone.aegis.net/touchstone/conformance/detail?suite=FHIR4-0-1-Basic-Server&sVersion=23&testSystem=5f9518730a120e4edef042ae&supportedOnly=false&cb=%2fFHIR4-0-1-Basic&format=ALL&published=true) (2,282 tests has been passed, 100% pass) * [FHIR4-0-1-Basic-Server version 18](https://touchstone.aegis.net/touchstone/conformance/detail?suite=FHIR4-0-1-Basic-Server&sVersion=18&testSystem=5f9518730a120e4edef042ae&supportedOnly=false&cb=%2fFHIR4-0-1-Basic&format=ALL&published=true) (2,216 tests has been passed, 100% Pass) * [FHIR4-0-1-Basic-Server version 14](https://touchstone.aegis.net/touchstone/conformance/detail?suite=FHIR4-0-1-Basic-Server&sVersion=14&testSystem=5f9518730a120e4edef042ae&supportedOnly=false&cb=%2FFHIR4-0-1-Basic&published=true) (1,948 tests has been passed, 100% Pass) From 72a48653e9880090a90b540ba59dc0c25a683990 Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Tue, 10 Oct 2023 10:37:38 +0800 Subject: [PATCH 03/10] chore: release v2.8.0 --- CHANGELOG.md | 48 +++++++++++++++++++++++++++++++++++++++++++++++ package-lock.json | 4 ++-- package.json | 2 +- 3 files changed, 51 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a7235664..e5864eac 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,54 @@ All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines. +## [2.8.0](https://github.com/Chinlinlee/Burni/compare/v2.7.2...v2.8.0) (2023-10-10) + + +### Features + +* add _pretty in BaseFhirApiService ([3f9524b](https://github.com/Chinlinlee/Burni/commit/3f9524bd7377c05cbebd324e8b16bb2257feabe7)) +* add "GET" method handler of bundle transaction ([3158637](https://github.com/Chinlinlee/Burni/commit/3158637f5d4784f2979d7cb9d53bb2af022ee310)) +* add env that not check ref association when delete ([e456501](https://github.com/Chinlinlee/Burni/commit/e45650193f67a2c204fbd094b56e1a0a857f0a69)) +* bundle transaction prototype ([918b469](https://github.com/Chinlinlee/Burni/commit/918b46941e9ad0bfe31ef429ca30da24860b9fca)) +* chain search of bundle special params ([000540f](https://github.com/Chinlinlee/Burni/commit/000540f2b5260cf03f3650f6762ef5d4d1a8c5d5)) +* change unique way of bundle ([6682fd3](https://github.com/Chinlinlee/Burni/commit/6682fd32dd8c3dac6b3f98424459270633a9ca17)) +* check is referenced when delete ([ef49215](https://github.com/Chinlinlee/Burni/commit/ef492159729931dd111fdfea5927badf0570b3ae)) +* search interaction for bundle transaction ([3b0ed0f](https://github.com/Chinlinlee/Burni/commit/3b0ed0fe94344fa0ae928db4c2f8923e3538cae9)) +* skip special bundle parameters of chain search ([bb393cf](https://github.com/Chinlinlee/Burni/commit/bb393cf3f65ed2dae4078f377ee8715479ebfd15)) +* support bundle message, composition search ([10bdedf](https://github.com/Chinlinlee/Burni/commit/10bdedf425d65225371a32f0b816a50d8df92510)) +* update usage of node fhir validator to 1.1.0 ([c1aafe8](https://github.com/Chinlinlee/Burni/commit/c1aafe8485dd4b7036dfc64346d29bf74ba8f275)) +* upgrade code of fhir validator v1.0.0 ([e76139e](https://github.com/Chinlinlee/Burni/commit/e76139e95241145c487fe5bf2f71bc1fe4201ce7)) +* use mongoose validation when validator disable ([4e12601](https://github.com/Chinlinlee/Burni/commit/4e12601eb6ae68ee846a63e39159b4de413a2403)) +* validate contained when validator disable ([3cd87d5](https://github.com/Chinlinlee/Burni/commit/3cd87d5b51b0078dce74279349a5a7ce2b93e9c5)) + + +### Bug Fixes + +* _format not working ([03bb722](https://github.com/Chinlinlee/Burni/commit/03bb7228b274e54aa6013dbb15941dd2cadacf7c)) +* [#6](https://github.com/Chinlinlee/Burni/issues/6) ([f66d627](https://github.com/Chinlinlee/Burni/commit/f66d627e4581476a8c0d758ed25917f05de23775)) +* cannot use uuid value in reference type ([7d9eae2](https://github.com/Chinlinlee/Burni/commit/7d9eae224f02ec6d08f63d259cac50771496a343)) +* date format incorrect ([7d60ee1](https://github.com/Chinlinlee/Burni/commit/7d60ee11cd385d316332c6debed342cf4e90b459)) +* delete return wrong object ([23c8de3](https://github.com/Chinlinlee/Burni/commit/23c8de339ca6df88c61cd5ea57a22f273cdb8ded)) +* fullUrl cannot be a version specific reference ([f09ca1f](https://github.com/Chinlinlee/Burni/commit/f09ca1f126af90c5a1bba5527caa328c7dc0ba0c)) +* fullUrl of history not complete ([519e1d6](https://github.com/Chinlinlee/Burni/commit/519e1d6f471991f680f8cd979b97cae88c576069)) +* history reset after deleting ([6d0da73](https://github.com/Chinlinlee/Burni/commit/6d0da73511ce4ef33a5df1c4aec781f195ea2e3a)) +* incorrect condition ([6c6a40f](https://github.com/Chinlinlee/Burni/commit/6c6a40fa02dea753e5378088a014790522d646de)) +* incorrect property of updateResult when failure ([dfeea59](https://github.com/Chinlinlee/Burni/commit/dfeea592ea709b90d7ba6afb5256c9226229e3c7)) +* incorrect require file ([51369f8](https://github.com/Chinlinlee/Burni/commit/51369f8e92d3ac7184eb2c8b46c4f7a9f0067e63)) +* incorrect require location ([fbfd78f](https://github.com/Chinlinlee/Burni/commit/fbfd78f7acef74407d19d6c3385c96539c9852a8)) +* incorrect require location ([4cb1391](https://github.com/Chinlinlee/Burni/commit/4cb13913c2cf8c15595782386dce8043d2166d7c)) +* incorrect statusCode of deletion ([153ddb3](https://github.com/Chinlinlee/Burni/commit/153ddb316d6ccefc3e34ae71410a7e2091e5b37a)) +* incorrect variable usage ([e2b80dd](https://github.com/Chinlinlee/Burni/commit/e2b80dd1583282ae49ae5e181de277a462380ba9)) +* Location not complete of create and update ([adf9d1f](https://github.com/Chinlinlee/Burni/commit/adf9d1fd95c0c17dd4bde0640293a73d2dc4edd0)) +* missing require dep ([610b58a](https://github.com/Chinlinlee/Burni/commit/610b58a2a7983345b3cc7f07255060a19e7a3284)) +* not convert to XML when request accept is XML ([85501a5](https://github.com/Chinlinlee/Burni/commit/85501a5b9628ba414a9202216a135be798f1592b)) +* not response when validation failure ([7e08340](https://github.com/Chinlinlee/Burni/commit/7e083406f067dc3668b3b87b99ed52ee4c1dd5f9)) +* refNode.value.split is not a function ([43c9212](https://github.com/Chinlinlee/Burni/commit/43c921248492bd86fdf6e66ae955d45bcedf8e91)) +* response content-type is not XML of uploading XML ([fe1982d](https://github.com/Chinlinlee/Burni/commit/fe1982dbe6ccdef5a322141965169209c786a38c)) +* URL of reference type search ([e2d56c8](https://github.com/Chinlinlee/Burni/commit/e2d56c8ab3d09b89454be083a87a2fb408b5b754)) +* variable not defined ([5a707c8](https://github.com/Chinlinlee/Burni/commit/5a707c8ac3de97b9ff0072d0d9777b492595d5a5)) +* xml is not working ([1819305](https://github.com/Chinlinlee/Burni/commit/18193053e3cf3fb3e0bfdb39b62b8d16ff8a097c)) + ### [2.7.2](https://github.com/Chinlinlee/Burni/compare/v2.7.1...v2.7.2) (2022-11-12) diff --git a/package-lock.json b/package-lock.json index 486f30e2..ae08623a 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "burni-fhir-server", - "version": "2.7.2", + "version": "2.8.0", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "burni-fhir-server", - "version": "2.7.2", + "version": "2.8.0", "license": "Apache-2.0 License", "dependencies": { "abort-controller": "^3.0.0", diff --git a/package.json b/package.json index d8fa7610..a01524f3 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "burni-fhir-server", - "version": "2.7.2", + "version": "2.8.0", "description": "The simple FHIR server implements with nodejs-express and mongoose.", "main": "index.js", "scripts": { From 9d05e944cbe046e7cfac2cfc27ca538814ea91ff Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Fri, 27 Oct 2023 21:28:03 +0800 Subject: [PATCH 04/10] chore: release v2.8.1 --- CHANGELOG.md | 7 +++++++ package-lock.json | 4 ++-- package.json | 2 +- 3 files changed, 10 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e5864eac..85853ef0 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,13 @@ All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines. +### [2.8.1](https://github.com/Chinlinlee/Burni/compare/v2.8.0...v2.8.1) (2023-10-27) + + +### Bug Fixes + +* update API broken ([4867f30](https://github.com/Chinlinlee/Burni/commit/4867f301ebee1a1c50c1c42a9c7d976885e9302e)) + ## [2.8.0](https://github.com/Chinlinlee/Burni/compare/v2.7.2...v2.8.0) (2023-10-10) diff --git a/package-lock.json b/package-lock.json index ae08623a..0d685cfc 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "burni-fhir-server", - "version": "2.8.0", + "version": "2.8.1", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "burni-fhir-server", - "version": "2.8.0", + "version": "2.8.1", "license": "Apache-2.0 License", "dependencies": { "abort-controller": "^3.0.0", diff --git a/package.json b/package.json index a01524f3..d006eb84 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "burni-fhir-server", - "version": "2.8.0", + "version": "2.8.1", "description": "The simple FHIR server implements with nodejs-express and mongoose.", "main": "index.js", "scripts": { From 88b46ae0b43f200e5b80e9f924a6e9f725129897 Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Fri, 8 Dec 2023 22:24:31 +0800 Subject: [PATCH 05/10] chore: bump mongoose to 8.0.3 and remove `mongoose-schema-jsonschema` package --- .../resourceGenerator.js | 1 - models/mongodb/model/Patient.js | 1 - package-lock.json | 1587 ++--------------- package.json | 3 +- 4 files changed, 158 insertions(+), 1434 deletions(-) diff --git a/FHIR-mongoose-Models-Generator/resourceGenerator.js b/FHIR-mongoose-Models-Generator/resourceGenerator.js index d0451181..2d8323f8 100644 --- a/FHIR-mongoose-Models-Generator/resourceGenerator.js +++ b/FHIR-mongoose-Models-Generator/resourceGenerator.js @@ -271,7 +271,6 @@ function generateResourceSchema(type) { // let importLib = "const mongoose = require('mongoose');\r\nconst moment = require('moment');\r\nconst _ = require('lodash');\r\n"; let code = `module.exports = function () { - require('mongoose-schema-jsonschema')(mongoose); const ${type} = ${JSON.stringify(result, null, 4) .replace(/\"/gm, "") .replace(/\\/gm, '"')};\r\n diff --git a/models/mongodb/model/Patient.js b/models/mongodb/model/Patient.js index 8bfbf5b9..06f585c7 100644 --- a/models/mongodb/model/Patient.js +++ b/models/mongodb/model/Patient.js @@ -53,7 +53,6 @@ const { checkResourceHaveReferenceByOthers } = require("../common"); module.exports = function() { - require('mongoose-schema-jsonschema')(mongoose); const Patient = { meta: { type: Meta, diff --git a/package-lock.json b/package-lock.json index 3d8eaa72..a4f802bf 100644 --- a/package-lock.json +++ b/package-lock.json @@ -33,8 +33,7 @@ "module-alias": "^2.2.3", "moment": "^2.24.0", "moment-timezone": "^0.5.33", - "mongoose": "^6.3.4", - "mongoose-schema-jsonschema": "^2.0.2", + "mongoose": "^8.0.3", "node-fetch": "^2.6.1", "node-java-fhir-validator": "^1.1.0", "node-schedule": "^2.1.0", @@ -65,637 +64,6 @@ "node": ">=0.10.0" } }, - "node_modules/@aws-crypto/crc32": { - 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"node_modules/tslib": { - "version": "2.6.2", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.6.2.tgz", - "integrity": "sha512-AEYxH93jGFPn/a2iVAwW87VuUIkR1FVUKB77NwMF7nBTDkDrrT/Hpt/IrCJ0QXhW27jTBDcf5ZY7w6RiqTMw2Q==", - "optional": true - }, "node_modules/type-check": { "version": "0.4.0", "resolved": "https://registry.npmjs.org/type-check/-/type-check-0.4.0.tgz", @@ -6611,6 +5333,11 @@ "integrity": "sha512-+A5Sja4HP1M08MaXya7p5LvjuM7K6q/2EaC0+iovj/wOcMsTzMvDFbasi/oSapiwOlt252IqsKqPjCl7huKS0A==", "dev": true }, + "node_modules/undici-types": { + "version": "5.26.5", + "resolved": "https://registry.npmjs.org/undici-types/-/undici-types-5.26.5.tgz", + "integrity": "sha512-JlCMO+ehdEIKqlFxk6IfVoAUVmgz7cU7zD/h9XZ0qzeosSHmUJVOzSQvvYSYWXkFXC+IfLKSIffhv0sVZup6pA==" + }, "node_modules/unpipe": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/unpipe/-/unpipe-1.0.0.tgz", diff --git a/package.json b/package.json index 752bd54e..fa0fb6ae 100644 --- a/package.json +++ b/package.json @@ -52,8 +52,7 @@ "module-alias": "^2.2.3", "moment": "^2.24.0", "moment-timezone": "^0.5.33", - "mongoose": "^6.3.4", - "mongoose-schema-jsonschema": "^2.0.2", + "mongoose": "^8.0.3", "node-fetch": "^2.6.1", "node-java-fhir-validator": "^1.1.0", "node-schedule": "^2.1.0", From 279231a7622e05d31d26a383b97e3c9fb589e57c Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Sat, 9 Dec 2023 09:14:15 +0800 Subject: [PATCH 06/10] build(docker): update Dockerfile Use the latest JDK-based image and bump Node.js version to 18.17.0 in the Dockerfile. In the docker-compose.yaml file, update the MongoDB image to version 7.0 --- Dockerfile | 25 +++++++++++++++++-------- docker-compose.yaml | 4 ++-- 2 files changed, 19 insertions(+), 10 deletions(-) diff --git a/Dockerfile b/Dockerfile index 4f400b1e..7ba0f1df 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,22 +1,31 @@ -FROM keymetrics/pm2:16-slim +FROM eclipse-temurin:17-jdk-jammy -# Install JDK -RUN apt update && apt install openjdk-11-jdk-headless make g++ python3 -y +# replace shell with bash so we can source files +RUN rm /bin/sh && ln -s /bin/bash /bin/sh + +ENV NODE_VERSION 18.17.0 + +# Installing Node +SHELL ["/bin/bash", "--login", "-i", "-c"] +RUN wget -qO- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.7/install.sh | bash +RUN source /root/.bashrc && nvm install $NODE_VERSION +RUN n=$(which node);n=${n%/bin/node}; chmod -R 755 $n/bin/*; cp -r $n/{bin,lib,share} /usr/local +SHELL ["/bin/bash", "--login", "-c"] WORKDIR / RUN mkdir -p /nodejs/fhir-burni/ -RUN chown -R node:node /nodejs WORKDIR /nodejs/fhir-burni/ # Bundle APP files -COPY --chown=node:node package*.json /nodejs/fhir-burni/ -COPY --chown=node:node . /nodejs/fhir-burni/ +COPY package*.json /nodejs/fhir-burni/ +COPY . /nodejs/fhir-burni/ # Install app dependencies ENV NPM_CONFIG_LOGLEVEL warn ENV NODE_ENV production +RUN npm i -g pm2 RUN npm ci --only=production +RUN node config/generate-config-allResources.js +RUN npm run build # Show current folder structure in logs -#RUN ls -al -R -USER node CMD [ "pm2-runtime", "start", "ecosystem.config.js", "--node-args=\"--max-old-space-size=4096\""] \ No newline at end of file diff --git a/docker-compose.yaml b/docker-compose.yaml index 994fbf24..e8f8fd14 100644 --- a/docker-compose.yaml +++ b/docker-compose.yaml @@ -1,7 +1,7 @@ version: '3.4' services: fhir-burni-mongodb: - image: mongo:4.2 + image: mongo:7.0 container_name : fhir-burni-mongodb restart: always ports: @@ -20,7 +20,7 @@ services: container_name: fhir-burni command: > /bin/sh -c ' - while ! nc -z fhir-burni-mongodb 27017; + while ! echo >/dev/tcp/fhir-burni-mongodb/27017; do echo "waiting for database ..."; sleep 3; From d8b5addb18fdbbdece5d03751f8283c156529be2 Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Wed, 24 Jan 2024 18:41:44 +0800 Subject: [PATCH 07/10] chore: run `npm audit fix` --- package-lock.json | 64 +++++++++++++++++++++++------------------------ 1 file changed, 32 insertions(+), 32 deletions(-) diff --git a/package-lock.json b/package-lock.json index a4f802bf..17ea6dee 100644 --- a/package-lock.json +++ b/package-lock.json @@ -65,12 +65,12 @@ } }, "node_modules/@babel/code-frame": { - "version": "7.22.13", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.22.13.tgz", - "integrity": "sha512-XktuhWlJ5g+3TJXc5upd9Ks1HutSArik6jf2eAjYFyIOf4ej3RN+184cZbzDvbPnuTJIUhPKKJE3cIsYTiAT3w==", + "version": "7.23.5", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.23.5.tgz", + "integrity": "sha512-CgH3s1a96LipHCmSUmYFPwY7MNx8C3avkq7i4Wl3cfa662ldtUe4VM1TPXX70pfmrlWTb6jLqTYrZyT2ZTJBgA==", "dev": true, "dependencies": { - "@babel/highlight": "^7.22.13", + "@babel/highlight": "^7.23.4", "chalk": "^2.4.2" }, "engines": { @@ -78,12 +78,12 @@ } }, "node_modules/@babel/generator": { - "version": "7.23.0", - "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.23.0.tgz", - "integrity": "sha512-lN85QRR+5IbYrMWM6Y4pE/noaQtg4pNiqeNGX60eqOfo6gtEj6uw/JagelB8vVztSd7R6M5n1+PQkDbHbBRU4g==", + "version": "7.23.6", + "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.23.6.tgz", + "integrity": "sha512-qrSfCYxYQB5owCmGLbl8XRpX1ytXlpueOb0N0UmQwA073KZxejgQTzAmJezxvpwQD9uGtK2shHdi55QT+MbjIw==", "dev": true, "dependencies": { - "@babel/types": "^7.23.0", + "@babel/types": "^7.23.6", "@jridgewell/gen-mapping": "^0.3.2", "@jridgewell/trace-mapping": "^0.3.17", "jsesc": "^2.5.1" @@ -139,9 +139,9 @@ } }, "node_modules/@babel/helper-string-parser": { - "version": "7.22.5", - "resolved": "https://registry.npmjs.org/@babel/helper-string-parser/-/helper-string-parser-7.22.5.tgz", - "integrity": "sha512-mM4COjgZox8U+JcXQwPijIZLElkgEpO5rsERVDJTc2qfCDfERyob6k5WegS14SX18IIjv+XD+GrqNumY5JRCDw==", + "version": "7.23.4", + "resolved": "https://registry.npmjs.org/@babel/helper-string-parser/-/helper-string-parser-7.23.4.tgz", + "integrity": "sha512-803gmbQdqwdf4olxrX4AJyFBV/RTr3rSmOj0rKwesmzlfhYNDEs+/iOcznzpNWlJlIlTJC2QfPFcHB6DlzdVLQ==", "dev": true, "engines": { "node": ">=6.9.0" @@ -157,9 +157,9 @@ } }, "node_modules/@babel/highlight": { - "version": "7.22.20", - "resolved": "https://registry.npmjs.org/@babel/highlight/-/highlight-7.22.20.tgz", - "integrity": "sha512-dkdMCN3py0+ksCgYmGG8jKeGA/8Tk+gJwSYYlFGxG5lmhfKNoAy004YpLxpS1W2J8m/EK2Ew+yOs9pVRwO89mg==", + "version": "7.23.4", + "resolved": "https://registry.npmjs.org/@babel/highlight/-/highlight-7.23.4.tgz", + "integrity": "sha512-acGdbYSfp2WheJoJm/EBBBLh/ID8KDc64ISZ9DYtBmC8/Q204PZJLHyzeB5qMzJ5trcOkybd78M4x2KWsUq++A==", "dev": true, "dependencies": { "@babel/helper-validator-identifier": "^7.22.20", @@ -171,9 +171,9 @@ } }, "node_modules/@babel/parser": { - "version": "7.23.0", - "resolved": "https://registry.npmjs.org/@babel/parser/-/parser-7.23.0.tgz", - "integrity": "sha512-vvPKKdMemU85V9WE/l5wZEmImpCtLqbnTvqDS2U1fJ96KrxoW7KrXhNsNCblQlg8Ck4b85yxdTyelsMUgFUXiw==", + "version": "7.23.6", + "resolved": "https://registry.npmjs.org/@babel/parser/-/parser-7.23.6.tgz", + "integrity": "sha512-Z2uID7YJ7oNvAI20O9X0bblw7Qqs8Q2hFy0R9tAfnfLkp5MW0UH9eUvnDSnFwKZ0AvgS1ucqR4KzvVHgnke1VQ==", "dev": true, "bin": { "parser": "bin/babel-parser.js" @@ -197,20 +197,20 @@ } }, "node_modules/@babel/traverse": { - "version": "7.23.0", - "resolved": "https://registry.npmjs.org/@babel/traverse/-/traverse-7.23.0.tgz", - "integrity": "sha512-t/QaEvyIoIkwzpiZ7aoSKK8kObQYeF7T2v+dazAYCb8SXtp58zEVkWW7zAnju8FNKNdr4ScAOEDmMItbyOmEYw==", + "version": "7.23.7", + "resolved": "https://registry.npmjs.org/@babel/traverse/-/traverse-7.23.7.tgz", + "integrity": "sha512-tY3mM8rH9jM0YHFGyfC0/xf+SB5eKUu7HPj7/k3fpi9dAlsMc5YbQvDi0Sh2QTPXqMhyaAtzAr807TIyfQrmyg==", "dev": true, "dependencies": { - "@babel/code-frame": "^7.22.13", - "@babel/generator": "^7.23.0", + "@babel/code-frame": "^7.23.5", + "@babel/generator": "^7.23.6", "@babel/helper-environment-visitor": "^7.22.20", "@babel/helper-function-name": "^7.23.0", "@babel/helper-hoist-variables": "^7.22.5", "@babel/helper-split-export-declaration": "^7.22.6", - "@babel/parser": "^7.23.0", - "@babel/types": "^7.23.0", - "debug": "^4.1.0", + "@babel/parser": "^7.23.6", + "@babel/types": "^7.23.6", + "debug": "^4.3.1", "globals": "^11.1.0" }, "engines": { @@ -218,12 +218,12 @@ } }, "node_modules/@babel/types": { - "version": "7.23.0", - "resolved": "https://registry.npmjs.org/@babel/types/-/types-7.23.0.tgz", - "integrity": "sha512-0oIyUfKoI3mSqMvsxBdclDwxXKXAUA8v/apZbc+iSyARYou1o8ZGDxbUYyLFoW2arqS2jDGqJuZvv1d/io1axg==", + "version": "7.23.6", + "resolved": "https://registry.npmjs.org/@babel/types/-/types-7.23.6.tgz", + "integrity": "sha512-+uarb83brBzPKN38NX1MkB6vb6+mwvR6amUulqAE7ccQw1pEl+bCia9TbdG1lsnFP7lZySvUn37CHyXQdfTwzg==", "dev": true, "dependencies": { - "@babel/helper-string-parser": "^7.22.5", + "@babel/helper-string-parser": "^7.23.4", "@babel/helper-validator-identifier": "^7.22.20", "to-fast-properties": "^2.0.0" }, @@ -475,9 +475,9 @@ "dev": true }, "node_modules/@jridgewell/trace-mapping": { - "version": "0.3.19", - "resolved": "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.19.tgz", - "integrity": "sha512-kf37QtfW+Hwx/buWGMPcR60iF9ziHa6r/CZJIHbmcm4+0qrXiVdxegAH0F6yddEVQ7zdkjcGCgCzUu+BcbhQxw==", + "version": "0.3.22", + "resolved": "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.22.tgz", + "integrity": "sha512-Wf963MzWtA2sjrNt+g18IAln9lKnlRp+K2eH4jjIoF1wYeq3aMREpG09xhlhdzS0EjwU7qmUJYangWa+151vZw==", "dev": true, "dependencies": { "@jridgewell/resolve-uri": "^3.1.0", From 4a0125d3873de7fb4dc14b6b181c79736bbb47a7 Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Wed, 24 Jan 2024 18:49:13 +0800 Subject: [PATCH 08/10] chore: release v2.8.2 --- CHANGELOG.md | 3 +++ package-lock.json | 4 ++-- package.json | 2 +- 3 files changed, 6 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 85853ef0..cb3c86d7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,9 @@ All notable changes to this project will be documented in this file. See [standard-version](https://github.com/conventional-changelog/standard-version) for commit guidelines. +### [2.8.2](https://github.com/Chinlinlee/Burni/compare/v2.8.0...v2.8.2) (2024-01-24) +patch change + ### [2.8.1](https://github.com/Chinlinlee/Burni/compare/v2.8.0...v2.8.1) (2023-10-27) diff --git a/package-lock.json b/package-lock.json index b0ee93fb..1e62036e 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "burni-fhir-server", - "version": "2.8.1", + "version": "2.8.2", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "burni-fhir-server", - "version": "2.8.1", + "version": "2.8.2", "license": "Apache-2.0 License", "dependencies": { "abort-controller": "^3.0.0", diff --git a/package.json b/package.json index e9deb35b..fc5cec09 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "burni-fhir-server", - "version": "2.8.1", + "version": "2.8.2", "description": "The simple FHIR server implements with nodejs-express and mongoose.", "main": "index.js", "scripts": { From 23b2e5d4d39df8346184c952b66d136e7491ecfe Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Wed, 24 Jan 2024 19:35:49 +0800 Subject: [PATCH 09/10] docs: update readme `features` and change language option - Add `create` in features - Burni support `create` but missing declare in docs - Add `vread` in `history-type-version` make reader know that is `vread` - Change language option - When in `English` do not using `a` tag, because we are already there --- README.md | 5 +++-- README.zh-TW.md | 5 +++-- 2 files changed, 6 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 3e1e928c..b3b23cf4 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@

Burni FHIR Server

- English + English | 繁體中文
@@ -17,12 +17,13 @@ Burni has been tested by AEGIS Touchstone Basic-R4-Server. The conformance resu ## features This server supported FHIR RESTFul API below: +- create (e.g. POST http://example.com/fhir/Patient) - read (e.g. GET http://example.com/fhir/Patient/example) - update (e.g. PUT http://example.com/fhir/Patient/example) - delete (e.g. DELETE http://example.com/fhir/Patient/example) - search (e.g. http://example.com/fhir/Patient?_id=example) - history-type (e.g. http://example.com/fhir/Patient/1/_history) -- history-type-version (e.g. e.g. http://example.com/fhir/Patient/1/_history/1) +- history-type-version/vread (e.g. e.g. http://example.com/fhir/Patient/1/_history/1) **Don't remove Bundle.js in models/mongodb/FHIRTypeSchema** diff --git a/README.zh-TW.md b/README.zh-TW.md index a56326b1..a0c2dcef 100644 --- a/README.zh-TW.md +++ b/README.zh-TW.md @@ -2,7 +2,7 @@

Burni FHIR Server

English | - 繁體中文 + 繁體中文
Burni 使用 Node.JS 、Express 框架以及 MongoDB 實作 FHIR R4 Server，經由簡單的設定即可產生指定 FHIR Resource的 Mongoose Schema、API程式碼並可自行更改，滿足需求。目前Burni支援Windows以及Linux，讓開發人員可以快速架設 FHIR Server。 @@ -18,12 +18,13 @@ Burni 使用 AEGIS Touchstone Basic-R4-Server 測試. ## 支援功能 This server supported FHIR RESTFul API below: +- create (e.g. POST http://example.com/fhir/Patient) - read (e.g. GET http://example.com/fhir/Patient/example) - update (e.g. PUT http://example.com/fhir/Patient/example) - delete (e.g. DELETE http://example.com/fhir/Patient/example) - search (e.g. http://example.com/fhir/Patient?_id=example) - history-type (e.g. http://example.com/fhir/Patient/1/_history) -- history-type-version (e.g. e.g. http://example.com/fhir/Patient/1/_history/1) +- history-type-version/vread (e.g. e.g. http://example.com/fhir/Patient/1/_history/1) **Don't remove Bundle.js in models/mongodb/FHIRTypeSchema** From 10f02d44c7aea5ada9cc131899cc5ab2bc41694f Mon Sep 17 00:00:00 2001 From: chinlinlee Date: Wed, 24 Jan 2024 19:39:42 +0800 Subject: [PATCH 10/10] docs: remove redundant `e.g.` in `vread` --- README.md | 2 +- README.zh-TW.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index b3b23cf4..a06236b6 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,7 @@ This server supported FHIR RESTFul API below: - delete (e.g. DELETE http://example.com/fhir/Patient/example) - search (e.g. http://example.com/fhir/Patient?_id=example) - history-type (e.g. http://example.com/fhir/Patient/1/_history) -- history-type-version/vread (e.g. e.g. http://example.com/fhir/Patient/1/_history/1) +- history-type-version/vread (e.g. http://example.com/fhir/Patient/1/_history/1) **Don't remove Bundle.js in models/mongodb/FHIRTypeSchema** diff --git a/README.zh-TW.md b/README.zh-TW.md index a0c2dcef..c17b392f 100644 --- a/README.zh-TW.md +++ b/README.zh-TW.md @@ -24,7 +24,7 @@ This server supported FHIR RESTFul API below: - delete (e.g. DELETE http://example.com/fhir/Patient/example) - search (e.g. http://example.com/fhir/Patient?_id=example) - history-type (e.g. http://example.com/fhir/Patient/1/_history) -- history-type-version/vread (e.g. e.g. http://example.com/fhir/Patient/1/_history/1) +- history-type-version/vread (e.g. http://example.com/fhir/Patient/1/_history/1) **Don't remove Bundle.js in models/mongodb/FHIRTypeSchema**