Issues

• Does two-level write transforms.csv and accept the long CSV, and do the twolevel_* post-processing scripts delegate to the shared scripts?

  wayfinder:grilling
  CoBrALab/optimized_antsMultivariateTemplateConstruction#149 · Filter by author gdevenyi opened on Sep 23, 2026

• Which determinants does each strategy produce, and how are they computed?

  wayfinder:grilling
  CoBrALab/optimized_antsMultivariateTemplateConstruction#148 · Filter by author gdevenyi opened on Sep 22, 2026
  2

• Wayfinder: alternative longitudinal strategies (Registration Chain, Tamarack, Overlapping group-wise)

  wayfinder:map
  CoBrALab/optimized_antsMultivariateTemplateConstruction#138 · Filter by author gdevenyi opened on Sep 21, 2026

• For modelbuild_input_from_bids.sh, allow users to specify more details for files to comb

  CoBrALab/optimized_antsMultivariateTemplateConstruction#133 · Filter by author danyluik opened on Mar 4, 2026

• In twolevel_modelbuild and twolevel_dbm if non-validated args are passed, print a warning to user

  CoBrALab/optimized_antsMultivariateTemplateConstruction#130 · Filter by author CMonnin opened on Oct 29, 2025
  1

• Redo volgenmodel method

  CoBrALab/optimized_antsMultivariateTemplateConstruction#129 · Filter by author gdevenyi opened on Oct 29, 2025

• Switch to new upstream antsRegistration_affine_SyN source for submodule

  CoBrALab/optimized_antsMultivariateTemplateConstruction#128 · Filter by author gdevenyi opened on Oct 29, 2025

• Allow for different registration settings for first vs second level

  CoBrALab/optimized_antsMultivariateTemplateConstruction#127 · Filter by author gdevenyi opened on Sep 29, 2025

• Use line-by-line hashing of input file for twolevel_modelbuild.sh to generate reproducable "new file names" instead of counting lines

  CoBrALab/optimized_antsMultivariateTemplateConstruction#126 · Filter by author gdevenyi opened on Sep 22, 2025

• Test if everything can be run with --float by default

  CoBrALab/optimized_antsMultivariateTemplateConstruction#124 · Filter by author gdevenyi opened on Aug 14, 2025

• Optional field-of-view correction

  CoBrALab/optimized_antsMultivariateTemplateConstruction#121 · Filter by author gdevenyi opened on Mar 11, 2025
  6

• Provide a docker/singularity container and use it as a $COMMAND_PREFIX wrapper

  CoBrALab/optimized_antsMultivariateTemplateConstruction#120 · Filter by author gdevenyi opened on Feb 24, 2025

• Add multiple stage specification for twolevel_modelbuild

  CoBrALab/optimized_antsMultivariateTemplateConstruction#119 · Filter by author gdevenyi opened on Feb 24, 2025

• Refactor common code

  CoBrALab/optimized_antsMultivariateTemplateConstruction#118 · Filter by author gdevenyi opened on Jan 30, 2025

• Use more variables

  CoBrALab/optimized_antsMultivariateTemplateConstruction#116 · Filter by author gdevenyi opened on Jan 29, 2025

• Store jobs/logs for twolevel-dbm in a different directory than dbm.sh

  CoBrALab/optimized_antsMultivariateTemplateConstruction#115 · Filter by author gdevenyi opened on Jan 29, 2025

• twolevel_modelbuild.sh don't allow mixed starting-target and firstlevel-starting-target options.

  CoBrALab/optimized_antsMultivariateTemplateConstruction#114 · Filter by author gdevenyi opened on Jan 28, 2025

• Add shape-update-method option

  CoBrALab/optimized_antsMultivariateTemplateConstruction#111 · Filter by author gdevenyi opened on Aug 22, 2024

• Implement per-stage average option

  CoBrALab/optimized_antsMultivariateTemplateConstruction#110 · Filter by author gdevenyi opened on Jul 29, 2024

• Matrix/Transforms info

  CoBrALab/optimized_antsMultivariateTemplateConstruction#104 · Filter by author gdevenyi opened on Jun 16, 2024

• Steal shape-updating from OMM-1

  CoBrALab/optimized_antsMultivariateTemplateConstruction#99 · Filter by author gdevenyi opened on Jan 3, 2024

• Parallelize IO in python

  CoBrALab/optimized_antsMultivariateTemplateConstruction#94 · Filter by author gdevenyi opened on Oct 6, 2023

• Implement streaming median/MAD implementation

  CoBrALab/optimized_antsMultivariateTemplateConstruction#92 · Filter by author gdevenyi opened on Oct 6, 2023
  1

• Add "launch detail" first info line

  CoBrALab/optimized_antsMultivariateTemplateConstruction#89 · Filter by author gdevenyi opened on Sep 6, 2023

• Implement robust mode of mincbigaverage

  CoBrALab/optimized_antsMultivariateTemplateConstruction#87 · Filter by author gdevenyi opened on Aug 28, 2023