Merge pull request #1102 from CombustionToolbox/develop

Update: documentation

Author: AlbertoCuadra

+combustiontoolbox/+shockturbulence/@ShockTurbulenceModel/ShockTurbulenceModel.m

@@ -1,5 +1,5 @@
 classdef (Abstract) ShockTurbulenceModel < handle
-    % The :mat:class:`ShockTurbulenceModel` abstract class defines the interface 
+    % The :mat:func:`ShockTurbulenceModel` abstract class defines the interface 
     % for modeling turbulence amplification across a shock wave interacting with 
     % weak turbulence using linear interaction analysis. It serves as the base class 
     % for specific shock–turbulence interaction models.

+combustiontoolbox/+shockturbulence/@ShockTurbulenceModelAcoustic/ShockTurbulenceModelAcoustic.m

@@ -1,5 +1,5 @@
 classdef ShockTurbulenceModelAcoustic < combustiontoolbox.shockturbulence.ShockTurbulenceModel
-    % The :mat:class:`ShockTurbulenceModelAcoustic` class characterizes 
+    % The :mat:func:`ShockTurbulenceModelAcoustic` class characterizes 
     % turbulence amplification across a shock wave interacting with weak turbulence
     % comprised of acoustic disturbances using linear theory.
     %

+combustiontoolbox/+shockturbulence/@ShockTurbulenceModelCompressible/ShockTurbulenceModelCompressible.m

@@ -1,5 +1,5 @@
 classdef ShockTurbulenceModelCompressible < combustiontoolbox.shockturbulence.ShockTurbulenceModel
-    % The :mat:class:`ShockTurbulenceModelCompressible` class characterizes 
+    % The :mat:func:`ShockTurbulenceModelCompressible` class characterizes 
     % turbulence amplification across a shock wave interacting with weak turbulence
     % comprised of vortical-entropic and acoustic disturbances using linear theory.
     %

+combustiontoolbox/+shockturbulence/@ShockTurbulenceModelVortical/ShockTurbulenceModelVortical.m

@@ -1,5 +1,5 @@
 classdef ShockTurbulenceModelVortical < combustiontoolbox.shockturbulence.ShockTurbulenceModel
-    % The :mat:class:`ShockTurbulenceModelVortical` class characterizes 
+    % The :mat:func:`ShockTurbulenceModelVortical` class characterizes 
     % turbulence amplification across a shock wave interacting with weak turbulence
     % comprised of vortical disturbances using linear theory.
     %

+combustiontoolbox/+shockturbulence/@ShockTurbulenceModelVorticalEntropic/ShockTurbulenceModelVorticalEntropic.m

@@ -1,5 +1,5 @@
 classdef ShockTurbulenceModelVorticalEntropic < combustiontoolbox.shockturbulence.ShockTurbulenceModel
-    % The :mat:class:`ShockTurbulenceModelVorticalEntropic` class characterizes 
+    % The :mat:func:`ShockTurbulenceModelVorticalEntropic` class characterizes 
     % turbulence amplification across a shock wave interacting with weak turbulence
     % comprised of vortical-entropic disturbances using linear theory.
     %

+combustiontoolbox/+shockturbulence/@ShockTurbulenceSolver/ShockTurbulenceSolver.m

@@ -1,5 +1,5 @@
 classdef ShockTurbulenceSolver < handle
-    % The :mat:class:`ShockTurbulenceSolver` class characterizes turbulence 
+    % The :mat:func:`ShockTurbulenceSolver` class characterizes turbulence 
     % amplification across a shock wave interacting with weak turbulence using 
     % linear interaction analysis.
     %

+combustiontoolbox/+utils/+display/@Canvas/Canvas.m

@@ -1,16 +1,16 @@
 classdef (Abstract) Canvas < handle
-    % The :mat:class:`Canvas` class is an abstract base class used to manage 
+    % The :mat:func:`Canvas` class is an abstract base class used to manage 
     % figure creation and plotting layout configuration in the :mat:pkg:`+display` module.
     %
-    % The :mat:class:`Canvas` class standardizes figure and axis formatting, 
+    % The :mat:func:`Canvas` class standardizes figure and axis formatting, 
     % provides tiled layout management, and offers utilities for axis selection and cycling.
     %
-    % A :mat:class:`Canvas` subclass can be initialized as follows: ::
+    % A :mat:func:`Canvas` subclass can be initialized as follows: ::
     %
     %      config = combustiontoolbox.utils.display.PlotConfig();
     %      fig = combustiontoolbox.utils.display.PlotFigure(config);
     %
-    % See also: :mat:class:`PlotConfig`, :mat:class:`PlotFigure`, :mat:class:`PlotComposition`
+    % See also: :mat:func:`PlotConfig`, :mat:func:`PlotFigure`, :mat:func:`PlotComposition`
 
     properties
         ax matlab.graphics.axis.Axes                             % Axis handle

+combustiontoolbox/+utils/+display/@PlotComposition/PlotComposition.m

@@ -1,16 +1,16 @@
 classdef PlotComposition < combustiontoolbox.utils.display.Canvas
-    % The :mat:class:`PlotComposition` class extends :mat:class:`Canvas` to generate
+    % The :mat:func:`PlotComposition` class extends :mat:func:`Canvas` to generate
     % species composition plots (e.g., molar fractions `Xi`) against an independent variable.
     %
-    % A :mat:class:`PlotComposition` object can be initialized as follows: ::
+    % A :mat:func:`PlotComposition` object can be initialized as follows: ::
     %
     %      config = combustiontoolbox.utils.display.PlotConfig();
     %      fig = combustiontoolbox.utils.display.PlotComposition(config);
     %      fig.plot(mixtureArray, 'equivalenceRatio', 'Xi');
     %
     % This creates a formatted figure with species composition plotted over the selected parameter.
     %
-    % See also: :mat:class:`Canvas`, :mat:class:`PlotFigure`, :mat:class:`PlotConfig`
+    % See also: :mat:func:`Canvas`, :mat:func:`PlotFigure`, :mat:func:`PlotConfig`
 
     properties (Access = private)
         FLAG_PLOT_VALIDATION = false; % Flag to indicate to plot validation data

+combustiontoolbox/+utils/+display/@PlotFigure/PlotFigure.m

@@ -1,17 +1,17 @@
 classdef PlotFigure < combustiontoolbox.utils.display.Canvas
-    % The :mat:class:`PlotFigure` class extends :mat:class:`Canvas` to provide a unified
+    % The :mat:func:`PlotFigure` class extends :mat:func:`Canvas` to provide a unified
     % plotting interface for thermodynamic and transport properties (e.g., `cp`, `h`, `Xi`)
     % against an arbitrary independent variable.
     %
-    % A :mat:class:`PlotFigure` object can be initialized as follows: ::
+    % A :mat:func:`PlotFigure` object can be initialized as follows: ::
     %
     %      config = combustiontoolbox.utils.display.PlotConfig();
     %      fig = combustiontoolbox.utils.display.PlotFigure(config);
     %      fig.plot('equivalenceRatio', mixArray, 'T', mixArray);
     %
-    % This creates a formatted plot with consistent styling using :mat:class:`PlotConfig`.
+    % This creates a formatted plot with consistent styling using :mat:func:`PlotConfig`.
     %
-    % See also: :mat:class:`Canvas`, :mat:class:`PlotComposition`, :mat:class:`PlotConfig`
+    % See also: :mat:func:`Canvas`, :mat:func:`PlotComposition`, :mat:func:`PlotConfig`
 
     properties (Access = private)
         colorIndex = 1; % Index for color cycling

+combustiontoolbox/+utils/@Benchmark/Benchmark.m

@@ -26,7 +26,7 @@
     %     % Generate and display the report
     %     bench.report();
     %
-    % See also: :mat:func:`combustiontoolbox.utils.timeFunction`, :mat:func:`combustiontoolbox.utils.extensions.cpuinfo`
+    % See also: :mat:func:`timeFunction`, :mat:func:`cpuinfo`
 
 
     properties