This folder contains the code to create figures of models and maps using ChimeraX.
The scripts for each figure can be found here which assume maps are in a maps folder and models organize in a models folder.
For the depiction of convergence and Q-score and convergence on the models, the B-factor column must be changed, this is accomplished by running get_pdbs_convergence_qscore.ipynb. This script will also output the ChimeraX scripts to be run to image these models. The images of models and map are created with commands in code_for_modeling_supp.txt.
Finally, the local resolution, calculated in CryoSPARC, was displayed in ChimeraX using the color sample command with the blue:white:red palette.