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CLEM database tables need to be updated #415

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tieneupin opened this issue Nov 29, 2024 · 0 comments
Open

CLEM database tables need to be updated #415

tieneupin opened this issue Nov 29, 2024 · 0 comments
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cryo-clem Part of the cryo-CLEM pipeline extension server Relates to the server component

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tieneupin commented Nov 29, 2024 •
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Now that we have a better of what the CLEM workflow should be, the tables and columns will need to be updated

CLEMImageSeries and CLEMImageStack

  • Image alignment to happen in stages:
    1. Align to self, then
    2. Flatten the image stacks (if desired)
    3. Align to a reference stack
  • If possible, try and keep aligned images in memory, and save only the final product
  • Individual RGB images do not need to be created; columns can be removed
  • Bright field + fluorescent and fluorescent-only composite images are desired; create a separate database table to register these files (CLEMCompositeImages?)
@tieneupin tieneupin added server Relates to the server component cryo-clem Part of the cryo-CLEM pipeline extension labels Nov 29, 2024
@tieneupin tieneupin self-assigned this Nov 29, 2024
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