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ekluzekekluzek
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Merge pull request #3634 from ekluzek/cmip7_ciso_in_ctsm54
ctsm5.4.002: Use the CMIP7 Carbon Isotope streams files by default
2 parents 08e9066 + 42a12e2 commit a00a459

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16 files changed

+221
-64
lines changed

16 files changed

+221
-64
lines changed

‎bld/CLMBuildNamelist.pm‎

Lines changed: 21 additions & 16 deletions
Original file line numberDiff line numberDiff line change
@@ -3779,15 +3779,14 @@ sub setup_logic_c_isotope {
37793779
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'use_c14_bombspike', 'use_c14'=>$use_c14 );
37803780
$use_c14_bombspike = $nl->get_value('use_c14_bombspike');
37813781
if ( &value_is_true($use_c14_bombspike) ) {
3782-
if ( defined($stream_fldfilename_atm_c14) ) {
3783-
&add_logical_to_nl_flags( $nl_flags, $nl, "use_c14_bombspike" );
3784-
setup_logic_c14_streams($opts, $nl_flags, $definition, $defaults, $nl);
3785-
} else {
3782+
&add_logical_to_nl_flags( $nl_flags, $nl, "use_c14_bombspike" );
3783+
setup_logic_c14_streams($opts, $nl_flags, $definition, $defaults, $nl);
3784+
$stream_fldfilename_atm_c14 = $nl->get_value('stream_fldfilename_atm_c14');
3785+
if ( ! defined($stream_fldfilename_atm_c14) ) {
37863786
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'atm_c14_filename',
37873787
'use_c14'=>$use_c14, 'use_cn'=>$nl_flags->{'use_cn'}, 'use_c14_bombspike'=>$nl->get_value('use_c14_bombspike'),
3788-
'ssp_rcp'=>$nl_flags->{'ssp_rcp'} );
3788+
'ssp_rcp'=>$nl_flags->{'ssp_rcp'}, 'cmip_era'=>$nl_flags->{'cmip_era'} );
37893789
}
3790-
$stream_fldfilename_atm_c14 = $nl->get_value('stream_fldfilename_atm_c14');
37913790
$atm_c14_filename = $nl->get_value('atm_c14_filename');
37923791
if ( defined($stream_fldfilename_atm_c14) && defined($atm_c14_filename) ) {
37933792
$log->fatal_error("Both stream_fldfilename_atm_c14 and atm_c14_filename set, only one should be set");
@@ -3809,15 +3808,14 @@ sub setup_logic_c_isotope {
38093808
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'use_c13_timeseries', 'use_c13'=>$use_c13 );
38103809
$use_c13_timeseries = $nl->get_value('use_c13_timeseries');
38113810
if ( &value_is_true($use_c13_timeseries) ) {
3812-
if ( defined($stream_fldfilename_atm_c13) ) {
3813-
&add_logical_to_nl_flags( $nl_flags, $nl, "use_c13_timeseries" );
3814-
setup_logic_c13_streams($opts, $nl_flags, $definition, $defaults, $nl);
3815-
} else {
3811+
&add_logical_to_nl_flags( $nl_flags, $nl, "use_c13_timeseries" );
3812+
setup_logic_c13_streams($opts, $nl_flags, $definition, $defaults, $nl);
3813+
$stream_fldfilename_atm_c13 = $nl->get_value('stream_fldfilename_atm_c13');
3814+
if ( ! defined($nl->get_value('stream_fldfilename_atm_c13')) ) {
38163815
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'atm_c13_filename',
38173816
'use_c13'=>$use_c13, 'use_cn'=>$nl_flags->{'use_cn'}, 'use_c13_timeseries'=>$nl->get_value('use_c13_timeseries'),
38183817
'ssp_rcp'=>$nl_flags->{'ssp_rcp'} );
38193818
}
3820-
$stream_fldfilename_atm_c13 = $nl->get_value('stream_fldfilename_atm_c13');
38213819
$atm_c13_filename = $nl->get_value('atm_c13_filename');
38223820
if ( defined($stream_fldfilename_atm_c13) && defined($atm_c13_filename) ) {
38233821
$log->fatal_error("Both stream_fldfilename_atm_c13 and atm_c13_filename set, only one should be set");
@@ -3859,7 +3857,11 @@ sub setup_logic_c13_streams {
38593857

38603858
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'stream_fldfilename_atm_c13',
38613859
'use_c13'=>$nl_flags->{'use_c13'}, 'use_c13_timeseries'=>$nl_flags->{'use_c13_timeseries'},
3862-
'ssp_rcp'=>$nl_flags->{'ssp_rcp'});
3860+
'ssp_rcp'=>$nl_flags->{'ssp_rcp'}, 'cmip_era'=>$nl_flags->{'cmip_era'}, 'nofail'=>1);
3861+
# If stream_fldfilename_atm_c13 is not defined then return and get the cmip6 file format version
3862+
if ( ! defined( $nl->get_value( "stream_fldfilename_atm_c13") ) ) {
3863+
return;
3864+
}
38633865

38643866
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'stream_year_first_atm_c13',
38653867
'sim_year'=>$nl_flags->{'sim_year'}, 'sim_year_range'=>$nl_flags->{'sim_year_range'});
@@ -3885,13 +3887,16 @@ sub setup_logic_c14_streams {
38853887

38863888
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'stream_fldfilename_atm_c14',
38873889
'use_c14'=>$nl_flags->{'use_c14'}, 'use_c14_bombspike'=>$nl_flags->{'use_c14_bombspike'},
3888-
'ssp_rcp'=>$nl_flags->{'ssp_rcp'});
3890+
'ssp_rcp'=>$nl_flags->{'ssp_rcp'}, 'nofail'=>1);
3891+
# If stream_fldfilename_atm_c14 is not defined then return and get the cmip6 file format version
3892+
if ( ! defined( $nl->get_value( "stream_fldfilename_atm_c14") ) ) {
3893+
return;
3894+
}
38893895

3890-
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'stream_meshfile_atm_c14',
3896+
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'stream_meshfile_atm_c14',
38913897
'use_c14'=>$nl_flags->{'use_c14'}, 'use_c14_bombspike'=>$nl_flags->{'use_c14_bombspike'});
38923898
if ( &remove_leading_and_trailing_quotes( $nl->get_value( "stream_meshfile_atm_c14") ) eq "none" ) {
3893-
# TODP: Change this to a fatal when we start using this
3894-
$log->warning( "stream_meshfile_atm_c14 is set to 'none' which will only copy the first latitude to the globe")
3899+
$log->fatal_error( "stream_meshfile_atm_c14 is set to 'none' which will only copy the first latitude to the globe")
38953900
}
38963901

38973902
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'stream_year_first_atm_c14',

‎bld/namelist_files/namelist_defaults_ctsm.xml‎

Lines changed: 18 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -131,25 +131,25 @@ attributes from the config_cache.xml file (with keys converted to upper-case).
131131
<use_c14 phys="clm6_0" bgc_mode="bgc" lnd_tuning_mode="clm6_0_cam7.0" ssp_rcp="hist">.true.</use_c14>
132132

133133
<!-- Carbon isotope concentration files -->
134-
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="hist" >lnd/clm2/isotopes/atm_delta_C13_CMIP6_1850-2015_yearly_v2.0_c190528.nc</atm_c13_filename>
135-
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP1-1.9" >lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP119_1850-2100_yearly_c181209.nc</atm_c13_filename>
136-
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP1-2.6" >lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP126_1850-2100_yearly_c181209.nc</atm_c13_filename>
137-
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP2-4.5" >lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP245_1850-2100_yearly_c181209.nc</atm_c13_filename>
138-
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP3-7.0" >lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP3B_1850-2100_yearly_c181209.nc</atm_c13_filename>
139-
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP5-3.4" >lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP534os_1850-2100_yearly_c181209.nc</atm_c13_filename>
140-
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP5-8.5" >lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP5B_1850-2100_yearly_c181209.nc</atm_c13_filename>
141-
142-
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="hist" >lnd/clm2/isotopes/atm_delta_C14_CMIP6_3x1_global_1850-2015_yearly_v2.0_c190528.nc</atm_c14_filename>
143-
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP1-1.9" >lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP119_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
144-
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP1-2.6" >lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP126_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
145-
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP2-4.5" >lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP245_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
146-
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP3-7.0" >lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP3B_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
147-
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP5-3.4" >lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP534os_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
148-
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP5-8.5" >lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP5B_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
134+
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="hist" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C13_CMIP6_1850-2015_yearly_v2.0_c190528.nc</atm_c13_filename>
135+
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP1-1.9" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP119_1850-2100_yearly_c181209.nc</atm_c13_filename>
136+
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP1-2.6" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP126_1850-2100_yearly_c181209.nc</atm_c13_filename>
137+
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP2-4.5" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP245_1850-2100_yearly_c181209.nc</atm_c13_filename>
138+
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP3-7.0" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP3B_1850-2100_yearly_c181209.nc</atm_c13_filename>
139+
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP5-3.4" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP534os_1850-2100_yearly_c181209.nc</atm_c13_filename>
140+
<atm_c13_filename use_c13=".true." use_c13_timeseries=".true." ssp_rcp="SSP5-8.5" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C13_CMIP6_SSP5B_1850-2100_yearly_c181209.nc</atm_c13_filename>
141+
142+
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="hist" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C14_CMIP6_3x1_global_1850-2015_yearly_v2.0_c190528.nc</atm_c14_filename>
143+
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP1-1.9" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP119_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
144+
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP1-2.6" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP126_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
145+
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP2-4.5" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP245_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
146+
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP3-7.0" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP3B_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
147+
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP5-3.4" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP534os_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
148+
<atm_c14_filename use_c14=".true." use_c14_bombspike =".true." ssp_rcp="SSP5-8.5" cmip_era="cmip6">lnd/clm2/isotopes/atm_delta_C14_CMIP6_SSP5B_3x1_global_1850-2100_yearly_c181209.nc</atm_c14_filename>
149149

150150
<!-- Settings for Carbon Isotope streams -->
151-
<stream_fldfilename_atm_c14 use_c14=".true." use_c14_bombspike =".true." ssp_rcp="hist" >lnd/clm2/isotopes/ctsmforc.Graven.atm_delta_C14_CMIP7_360x720_1700-2023_yearly_v3.0_c251117.nc</stream_fldfilename_atm_c14>
152-
<stream_meshfile_atm_c14 use_c14=".true." use_c14_bombspike =".true." >share/meshes/360x720_120830_ESMFmesh_c20210507.nc</stream_meshfile_atm_c14>
151+
<stream_fldfilename_atm_c14 use_c14=".true." use_c14_bombspike =".true." ssp_rcp="hist" cmip_era="cmip7">lnd/clm2/isotopes/ctsmforc.Graven.atm_delta_C14_CMIP7_360x720_1700-2023_yearly_v3.0_c251117.nc</stream_fldfilename_atm_c14>
152+
<stream_meshfile_atm_c14 use_c14=".true." use_c14_bombspike =".true." >share/meshes/360x720_120830_ESMFmesh_c20210507_cdf5.nc</stream_meshfile_atm_c14>
153153

154154
<!-- The following are only set if both use_c14 and use_c14_bombspike are TRUE -->
155155
<stream_year_first_atm_c14 sim_year="2018" sim_year_range="constant">2018</stream_year_first_atm_c14>
@@ -174,7 +174,7 @@ attributes from the config_cache.xml file (with keys converted to upper-case).
174174
<stream_year_last_atm_c14 sim_year_range="1850-2000" >2023</stream_year_last_atm_c14>
175175
<stream_model_year_align_atm_c14 sim_year_range="1850-2000" >1700</stream_model_year_align_atm_c14>
176176

177-
<stream_fldfilename_atm_c13 use_c13=".true." use_c13_timeseries=".true." ssp_rcp="hist" >lnd/clm2/isotopes/ctsmforc.Graven.atm_delta_C13_CMIP7_global_1700-2023_yearly_v3.0_c251013.nc</stream_fldfilename_atm_c13>
177+
<stream_fldfilename_atm_c13 use_c13=".true." use_c13_timeseries=".true." ssp_rcp="hist" cmip_era="cmip7">lnd/clm2/isotopes/ctsmforc.Graven.atm_delta_C13_CMIP7_global_1700-2023_yearly_v3.0_c251013.nc</stream_fldfilename_atm_c13>
178178

179179
<!-- The following are only set if both use_c13 and use_c13_bonbspike are TRUE -->
180180
<stream_year_first_atm_c13 sim_year="2018" sim_year_range="constant" >2018</stream_year_first_atm_c13>

‎cime_config/testdefs/ExpectedTestFails.xml‎

Lines changed: 16 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,22 @@
102102
</phase>
103103
</test>
104104

105+
<test name="ERP_D_Ld9.f10_f10_mg37.I1850Clm60BgcCrop.izumi_nag.clm-clm60cam7LndTuningModeLDust">
106+
<phase name="COMPARE_base_rest">
107+
<status>FAIL</status>
108+
<issue>#3654</issue>
109+
<comment>This is a problem with the nn mapalgo method in streams with ESMF prior to 8.9.0</comment>
110+
</phase>
111+
</test>
112+
113+
<test name="ERP_D_Ld9.f10_f10_mt232.IHistClm60BgcCrop.derecho_intel.clm-clm60cam7LndTuningModeLDust--clm-nnStreamMapAlgo">
114+
<phase name="COMPARE_base_rest">
115+
<status>FAIL</status>
116+
<issue>#3654</issue>
117+
<comment>This is a problem with the nn mapalgo method in streams with ESMF prior to 8.9.0</comment>
118+
</phase>
119+
</test>
120+
105121
<test name="ERP_P64x2_Ld396.f10_f10_mg37.IHistClm60Bgc.derecho_intel.clm-monthly--clm-matrixcnOn_ignore_warnings">
106122
<phase name="BASELINE">
107123
<status>FAIL</status>

‎cime_config/testdefs/testlist_clm.xml‎

Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -167,6 +167,15 @@
167167
<option name="comment">CESM3 development Exact restart test with change in the processor count at f10, for izumi nag</option>
168168
</options>
169169
</test>
170+
<test name="ERP_D_Ld9" grid="f10_f10_mt232" compset="IHistClm60BgcCrop" testmods="clm/clm60cam7LndTuningModeLDust--clm/nnStreamMapAlgo">
171+
<machines>
172+
<machine name="derecho" compiler="intel" category="aux_clm"/>
173+
</machines>
174+
<options>
175+
<option name="wallclock">00:20:00</option>
176+
<option name="comment">CESM3 development Exact restart test with Nearest Neighbor streams mapalgo and change in the processor count at f10</option>
177+
</options>
178+
</test>
170179
<test name="ERP_D_Ld9" grid="ne30pg3_t232" compset="I1850Clm60BgcCropG" testmods="clm/clm60cam6LndTuningMode">
171180
<machines>
172181
<machine name="derecho" compiler="intel" category="aux_clm"/>

‎cime_config/testdefs/testmods_dirs/clm/ciso_cmip7_monthly_2013Start/README‎

Lines changed: 0 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1 @@
11
This tests with the new CMIP7 Carbon isotope datasets as streams.
2-
3-
However, this uses the initial version of C14 and hence C14 is constant with the value
4-
over the southern pole latitude band. When we can change answers the ignore-warning should
5-
be removed and the CMIP7 defaults setup to use the streams rather than default to the
6-
CMIP6 version.

‎cime_config/testdefs/testmods_dirs/clm/ciso_cmip7_monthly_2013Start/shell_commands‎

Lines changed: 0 additions & 4 deletions
This file was deleted.

‎cime_config/testdefs/testmods_dirs/clm/ciso_cmip7_monthly_2013Start/user_nl_clm‎

Lines changed: 1 addition & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,5 @@
1-
stream_fldfilename_atm_c13 = '$DIN_LOC_ROOT/lnd/clm2/isotopes/ctsmforc.Graven.atm_delta_C13_CMIP7_global_1700-2023_yearly_v3.0_c251013.nc'
2-
! NOTE: This file is the one with only 4 latitude bands, and can't be used by streams for regridding
3-
! The one copied to a half degree grid can be used to regrid the bands properly
4-
stream_fldfilename_atm_c14 = '$DIN_LOC_ROOT/lnd/clm2/isotopes/ctsmforc.Graven.atm_delta_C14_CMIP7_4x1_global_1700-2023_yearly_v3.0_c251013.nc'
1+
hist_dov2xy = .true.,.true. ! Set both history output files to 2D grid, so can be evaluated
52
stream_year_first_atm_c14 = 2013
6-
stream_meshfile_atm_c14 = 'none' ! NOTE: By NOT using a mesh file this means the first value will be copied to the whole grid rather than regridded
73
stream_model_year_align_atm_c14 = 2013
84
stream_year_first_atm_c13 = 2013
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stream_model_year_align_atm_c13 = 2013

‎cime_config/testdefs/testmods_dirs/clm/f09_ObscureStreamOpts/README‎

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Tests with it need to be at f09 resolution so that the redist option can be tried
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NOTE: The none option doesn't seem to work, which likely means it only works with data for a single grid point EBK 7/23/2025
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NOTE: The none option doesn't work as it only works with data for a single grid point EBK 12/10/2025

‎cime_config/testdefs/testmods_dirs/clm/f09_ObscureStreamOpts/user_nl_clm‎

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lightng_tintalgo = 'nearest'
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popdens_tintalgo = 'linear' ! The default for this is nearest
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urbantv_tintalgo = 'upper'
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! Turn on Carbon isotopes and their streams
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use_c14 = .true.
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use_c13 = .true.
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use_c13_timeseries = .true.
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use_c14_bombspike = .true.
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! Turn on any optional history output that outputs the optional streams
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hist_fincl1 = 'RC13_CANAIR', 'RC14_CANAIR'
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hist_fincl1 += 'HDM', 'LNFM'
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hist_fincl1 += 'TBUILD_MAX', 'P_AC'
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hist_fincl1 += 'EXCESS_ICE'
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hist_fincl1 += 'LND_MBL'
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!hist_fincl1 += 'DPFCT_ROCK' ! This can only be output when Leung2024 dust emissions are on

‎cime_config/testdefs/testmods_dirs/clm/nnStreamMapAlgo/README‎

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This test runs most of the streams options with mapalgo for "nn" Nearest Neighbor

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