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🔧 Move abcd-prep surface options in config #2176

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sgiavasis opened this issue Jan 24, 2025 · 0 comments · Fixed by #2178
Open
1 task

🔧 Move abcd-prep surface options in config #2176

sgiavasis opened this issue Jan 24, 2025 · 0 comments · Fixed by #2178

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@sgiavasis
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Related problem

The two res-2 template resources under FNIRT registration in the pipeline configuration are in the wrong place, and often throw errors when users are not using the ABCD pipeline-style Freesurfer prep workflows.

These are only used in the fnirt_based_brain_extraction nodeblock, which is only used for the Freesurfer prep workflow mentioned.

Proposed feature

These parameters are not ideal and are too specific, and need a refactor.
But in the meantime, these should be moved under the abcd_prefreesurfer_prep tier.

Acceptance criteria

  • The ref_mask_res-2 and T1w_template_res-2 fields are moved out of registration and into surface.

Alternatives

No response

Additional context

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