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These are only used in the fnirt_based_brain_extraction nodeblock, which is only used for the Freesurfer prep workflow mentioned.
Proposed feature
These parameters are not ideal and are too specific, and need a refactor.
But in the meantime, these should be moved under the abcd_prefreesurfer_prep tier.
Acceptance criteria
The ref_mask_res-2 and T1w_template_res-2 fields are moved out of registration and into surface.
Alternatives
No response
Additional context
No response
The text was updated successfully, but these errors were encountered:
Related problem
The two
res-2
template resources under FNIRT registration in the pipeline configuration are in the wrong place, and often throw errors when users are not using theABCD
pipeline-style Freesurfer prep workflows.These are only used in the
fnirt_based_brain_extraction
nodeblock, which is only used for the Freesurfer prep workflow mentioned.Proposed feature
These parameters are not ideal and are too specific, and need a refactor.
But in the meantime, these should be moved under the abcd_prefreesurfer_prep tier.
Acceptance criteria
ref_mask_res-2
andT1w_template_res-2
fields are moved out of registration and into surface.Alternatives
No response
Additional context
No response
The text was updated successfully, but these errors were encountered: