install numcodes seperately

FREVA-CLINT · Dec 3, 2024 · 8d1e7a4 · 8d1e7a4
1 parent f970139
commit 8d1e7a4
Showing 1 changed file with 7 additions and 2 deletions.
diff --git a/freva-rest/Dockerfile b/freva-rest/Dockerfile
@@ -14,6 +14,7 @@ RUN apt-get update && \
     libblosc-dev \
     gnupg wget git ca-certificates \
     default-jre bash procps \
+    libz-dev liblz4-dev zlib1g-dev \
     && rm -rf /var/lib/apt/lists/*
 
 # mongodb
@@ -75,7 +76,10 @@ ENV API_CONFIG=/opt/freva-rest/api_config.toml \
     USE_MONGODB=1 \
     USE_SOLR=1 \
     # To avoid the error installing numcodecs on ARM
-    BLOSC_NO_INTRINSICS=1 
+    BLOSC_NO_INTRINSICS=1 \
+    SETUPTOOLS_USE_DISTUTILS=stdlib \
+    ARCHFLAGS="-arch arm64"
+
 
 RUN mkdir -p /etc/mongodb /opt/app /opt/freva-rest ${SOLR_HOME} ${MONGO_HOME}/data && \
     echo "security:\n  authorization: enabled\n\
@@ -93,8 +97,9 @@ RUN /opt/solr/docker/scripts/init-var-solr && \
 FROM base AS builder
 WORKDIR /opt/app
 COPY . .
-RUN python3 -m pip install --upgrade pip --break-system-packages && \
+RUN python3 -m pip install --upgrade pip setuptools wheel --break-system-packages && \
     python3 -m pip install build --break-system-packages && \
+    python3 -m pip install numcodecs --no-binary numcodecs --break-system-packages && \
     python3 -m pip install . --break-system-packages && \
     python3 -m build --sdist --wheel