Bump ton of dependencies (#92)

WoWaster · web-flow · commit cccddb93ba94 · 2024-02-24T18:04:58.000+03:00
* Bump everything * Fix labeled free scale graph generation In newer versions create_using argument is missing * Fix number of edges for fast binomial graph networkx/networkx@dc3c486 changed algorithm in NetworkX 2.7 * Change sphinx theme activation html_theme_path no longer needed as of their tutorial
diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
@@ -7,7 +7,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ 3.8 ]
+        python-version: [ 3.9 ]
     steps:
       - uses: actions/checkout@v3
 
diff --git a/.github/workflows/deploy_docs.yml b/.github/workflows/deploy_docs.yml
@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ 3.8 ]
+        python-version: [ 3.9 ]
     steps:
       - uses: actions/checkout@v3
 
diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
@@ -7,7 +7,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ 3.8 ]
+        python-version: [ 3.9 ]
     steps:
       - uses: actions/checkout@v3
 
@@ -18,7 +18,7 @@ jobs:
 
       - name: Install pre-commit
         run: |
-          python -m pip install pre-commit==2.20.0
+          python -m pip install pre-commit==3.6.2
           pre-commit install
 
       - name: Run pre-commit
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -12,7 +12,7 @@ jobs:
             macos-latest,
             windows-latest,
         ]
-        python-version: [ 3.8, 3.9 ]
+        python-version: [ 3.9 ]
     steps:
       - uses: actions/checkout@v3
 
diff --git a/cfpq_data/graphs/generators/fast_labeled_binomial_graph.py b/cfpq_data/graphs/generators/fast_labeled_binomial_graph.py
@@ -46,7 +46,7 @@ def fast_labeled_binomial_graph(
     >>> g.number_of_nodes()
     42
     >>> g.number_of_edges()
-    722
+    711
 
     Returns
     -------
diff --git a/cfpq_data/graphs/generators/labeled_scale_free_graph.py b/cfpq_data/graphs/generators/labeled_scale_free_graph.py
@@ -90,7 +90,6 @@ def labeled_scale_free_graph(
         delta_in=delta_in,
         delta_out=delta_out,
         seed=seed,
-        create_using=nx.MultiDiGraph,
     )
 
     random.seed(seed)
diff --git a/docs/conf.py b/docs/conf.py
@@ -16,8 +16,6 @@
 import sys
 from datetime import date
 
-from pydata_sphinx_theme import get_html_theme_path
-
 sys.path.insert(0, os.path.abspath(".."))
 
 # -- Project information -----------------------------------------------------
@@ -123,7 +121,6 @@
 # a list of builtin themes.
 #
 html_theme = "pydata_sphinx_theme"
-html_theme_path = get_html_theme_path()
 
 # Theme options are theme-specific and customize the look and feel of a theme
 # further.  For a list of options available for each theme, see the
diff --git a/requirements/default.txt b/requirements/default.txt
@@ -1,5 +1,5 @@
-networkx==2.6.2
-pandas==1.3.4
-pyformlang==1.0.1
-rdflib==6.0.0
-requests==2.26.0
+networkx==3.2.1
+pandas==2.2.1
+pyformlang==1.0.7
+rdflib==7.0.0
+requests==2.31.0
diff --git a/requirements/developer.txt b/requirements/developer.txt
@@ -1,3 +1,3 @@
-black==22.10
-pre-commit==2.20
-pytest==6.2.4
+black==24.2.0
+pre-commit==3.6.2
+pytest==8.0.1
diff --git a/requirements/docs.txt b/requirements/docs.txt
@@ -1,5 +1,5 @@
-nb2plots==0.6
-numpydoc==1.1.0
-pydata_sphinx_theme==0.6.3
-sphinx==4.1.2
-sphinx-copybutton==0.4.0
+nb2plots==0.7.2
+numpydoc==1.6.0
+pydata_sphinx_theme==0.15.2
+sphinx==7.2.6
+sphinx-copybutton==0.5.2
diff --git a/setup.py b/setup.py
@@ -48,7 +48,6 @@
     "Operating System :: Unix",
     "Operating System :: Microsoft :: Windows",
     "Operating System :: OS Independent",
-    "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3 :: Only",
     "Topic :: Software Development :: Libraries :: Python Modules",
diff --git a/tests/graphs/generators/test_fast_labeled_binomial_graph.py b/tests/graphs/generators/test_fast_labeled_binomial_graph.py
@@ -12,7 +12,7 @@
 
 
 @pytest.mark.parametrize(
-    "graph,expected_nodes,expected_edges", [(g1, 29, 91), (g2, 42, 182)]
+    "graph,expected_nodes,expected_edges", [(g1, 29, 85), (g2, 42, 177)]
 )
 def test_fast_labeled_binomial_graph(graph, expected_nodes, expected_edges):
     assert graph.number_of_nodes() == expected_nodes

Original file line number	Diff line number	Diff line change
`@@ -12,7 +12,7 @@ jobs:`
`12`	`12`	`macos-latest,`
`13`	`13`	`windows-latest,`
`14`	`14`	`]`
`15`		`- python-version: [ 3.8, 3.9 ]`
	`15`	`+ python-version: [ 3.9 ]`
`16`	`16`	`steps:`
`17`	`17`	`- uses: actions/checkout@v3`
`18`	`18`
Original file line number	Diff line number	Diff line change
`@@ -46,7 +46,7 @@ def fast_labeled_binomial_graph(`
`46`	`46`	`>>> g.number_of_nodes()`
`47`	`47`	`42`
`48`	`48`	`>>> g.number_of_edges()`
`49`		`- 722`
	`49`	`+ 711`
`50`	`50`
`51`	`51`	`Returns`
`52`	`52`	`-------`
Original file line number	Diff line number	Diff line change
`@@ -90,7 +90,6 @@ def labeled_scale_free_graph(`
`90`	`90`	`delta_in=delta_in,`
`91`	`91`	`delta_out=delta_out,`
`92`	`92`	`seed=seed,`
`93`		`- create_using=nx.MultiDiGraph,`
`94`	`93`	`)`
`95`	`94`
`96`	`95`	`random.seed(seed)`
Original file line number	Diff line number	Diff line change
`@@ -12,7 +12,7 @@`
`12`	`12`
`13`	`13`
`14`	`14`	`@pytest.mark.parametrize(`
`15`		`- "graph,expected_nodes,expected_edges", [(g1, 29, 91), (g2, 42, 182)]`
	`15`	`+ "graph,expected_nodes,expected_edges", [(g1, 29, 85), (g2, 42, 177)]`
`16`	`16`	`)`
`17`	`17`	`def test_fast_labeled_binomial_graph(graph, expected_nodes, expected_edges):`
`18`	`18`	`assert graph.number_of_nodes() == expected_nodes`