scnoisemeter/pyproject.toml at main · FullLengthFanatic/scnoisemeter · GitHub

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[build-system]
requires = ["setuptools>=77", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "scnoisemeter"
version = "0.7.2"
description = "Barcode-aware alignment artifact and read-distribution QC for single-cell RNA-seq"
readme = "README.md"
requires-python = ">=3.9"
license = "MIT"
authors = [{ name = "scNoiseMeter contributors" }]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3 :: Only",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

dependencies = [
    "pysam>=0.22",
    "pyranges>=0.0.129",
    "pandas>=2.0",
    "numpy>=1.24",
    "click>=8.1",
    "plotly>=5.18",
    "scipy>=1.11",
    "tqdm>=4.66",
]

[project.optional-dependencies]
dev = ["pytest>=7", "pytest-cov", "black", "ruff"]

[project.scripts]
scnoisemeter = "scnoisemeter.cli:cli"

[project.urls]
Homepage = "https://github.com/FullLengthFanatic/scnoisemeter"
Issues = "https://github.com/FullLengthFanatic/scnoisemeter/issues"
Documentation = "https://github.com/FullLengthFanatic/scnoisemeter/tree/main/docs"

[tool.setuptools.packages.find]
where = ["."]
include = ["scnoisemeter*"]

[tool.setuptools.package-data]
"scnoisemeter.data" = ["whitelists/*.txt.gz", "references/*.bed.gz"]

[tool.ruff]
line-length = 100

[tool.pytest.ini_options]
testpaths = ["tests"]