v0.1.16

This release adds the following features:

• Significantly reduced memory usage when SAM file header contains many (1000s) of sequences from the reference genome used during alignment.
• Added SAMBLASTER_supplemental.pdf to the github site.

v0.1.15

This release adds the following features:

• Added license terms for samblaster use.
• Added --removeDups option that removes duplicates from the main and all other output files.
• When identifying duplicates, the unmapped read of orphan pairs need not be in the input file.
• Single-read alignments are now supported as orphan pairs in which the unmapped read is missing.
• Secondary alignments are now recognized by both the SAM flag 0x100 and 0x800.

v0.1.14

This is a major new release of samblaster that includes the following changes:

• New data structure uses less than half the memory as prior release;
  now averages about 20 bytes per read pair while marking duplicates.
• More accurate duplicate identification using 5' end of reads as reference offset.
• More control over which reads will be included in splitter file;
  --minIndelSize and --maxUnmappedBases parameters added.
• New capability to output unmapped/clipped reads into a FASTQ file for re-alignment,
  controlled by --unmappedFile and --minClipSize parameters.
• Recent version of g++ is no longer required to compile samblaster.
• Added --quiet mode to optionally suppress most informational output to stderr.

v0.1.9

Initial Release