Merge pull request #505 from I2PC/v1.0

Added v1.0.1 release notes to CHANGELOG.md

Author: delarosatrevin

CHANGELOG.md

@@ -1,4 +1,34 @@
 
+## v1.0.1 (2016-06-30) 
+
+- Several protocol fixes:
+   - Fixed bug when creating the output for Frealign (in some cases some information from input particles was not properly propagated)
+   - Fixed some bugs in movie alignment protocols (summovie and unblur) and tests added
+   - Some minor bugs fixed in Relion protocols
+   - Bugs fixed in Resmap protocol when using two half volumes
+- Fixed several bugs in Spider protocols: 
+   - converting input particles with alignment 
+   - wrong regular expression for replacing some variables in script template
+   - parsing of the resulting dendrogram
+   - some additional validations and removed unused code
+- Bugfixes and inprovements in Xmipp protocols:
+   - Protocols screen-classes merged into one: compare-reprojections
+   - Complete refactoring of operate-particles and operate-volumes protocols (previously called 2D and 3D calculator). Tests added
+- Picking and Viewer: 
+   - Warning if particles are picked in a temporary folder and the SetOfParticles was not created
+   - Improved implementation of assign-tiltpairs protocol in Xmipp and some refactoring of picking methods
+   - Fixed bug that caused GUI to freeze sometimes
+   - Some bugs fixed when displaying and exporting particles
+   - Sorting arrows displayed after sorting by a column. Hourglass displayed while sorting.
+   - Some bug fixed when creating subset from classes
+- Other fixes or improvements:
+   - ImageHandler's methods convert and writeStack now accepts alignment parameters
+   - Fixed bug when displaying Movies summary (sqlite files were not closed)
+   - Fixed bug when spawning Eman process to write particles
+   - Added REMOTE_MESA_LIB environment var for using OpenGL in remote desktops
+   - Created a LegacyProtocol class to read deprecated protocols
+   - Cleanup in some tests and added new ones for core classes or functions
+
 ## v1.0.0 (2016-02-20) Augusto
 
 - Allows to combine several EM software packages (~ 100 protocols):