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@@ -286,23 +598,296 @@
},
{
"cell_type": "code",
- "execution_count": 9,
- "id": "de4dfee3-1f5e-41d4-a599-02d1d9cbdf0e",
- "metadata": { "tags": ["skip-execution"] },
- "outputs": [],
+ "execution_count": 10,
+ "id": "3f3b109f-5307-48f5-afd6-dfd19622640b",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
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+ " name='',\n",
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+ " \u001b[1m[\u001b[0m\u001b[1;36m0\u001b[0m, \u001b[1;36m0\u001b[0m, \u001b[1;36m0\u001b[0m, \u001b[33m...\u001b[0m, \u001b[1;36m0\u001b[0m, \u001b[1;36m0\u001b[0m, \u001b[1;36m0\u001b[0m\u001b[1m]\u001b[0m\u001b[1m]\u001b[0m\u001b[1m]\u001b[0m, \u001b[33mdtype\u001b[0m=\u001b[35mint16\u001b[0m\u001b[1m)\u001b[0m,\n",
+ " \u001b[33mbufferedRegion\u001b[0m=\u001b[1m{\u001b[0m\u001b[32m'index'\u001b[0m: \u001b[1m[\u001b[0m\u001b[1;36m0\u001b[0m, \u001b[1;36m0\u001b[0m, \u001b[1;36m0\u001b[0m\u001b[1m]\u001b[0m, \u001b[32m'size'\u001b[0m: \u001b[1m[\u001b[0m\u001b[1;36m512\u001b[0m, \u001b[1;36m512\u001b[0m, \u001b[1;36m109\u001b[0m\u001b[1m]\u001b[0m\u001b[1m}\u001b[0m\n",
+ "\u001b[1m)\u001b[0m\n"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
"source": [
- "segthor_viewer.set_image_color_range([-1260, 2385])\n",
- "segthor_viewer.set_label_image_blend(0.90)\n",
- "segthor_viewer.set_image_gradient_opacity(0.45)\n",
- "segthor_viewer.set_image_gradient_opacity_scale(0.55)"
+ "print(seg_image)"
]
},
{
- "cell_type": "markdown",
- "id": "05608a80-fbe3-4adb-81b9-b9f92695c5c1",
+ "cell_type": "code",
+ "execution_count": 11,
+ "id": "aaea5b0c-bf96-4af1-a932-30e29c360cc6",
"metadata": {},
+ "outputs": [
+ {
+ "data": {
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+ "\n",
+ "\u001b[39m PixelContainer: \u001b[0m\n",
+ "\u001b[39m ImportImageContainer \u001b[0m\u001b[1;39m(\u001b[0m\u001b[1;36m0x5e4d0e79edd0\u001b[0m\u001b[1;39m)\u001b[0m\n",
+ "\u001b[39m RTTI typeinfo: itk::ImportImageContainer\u001b[0m\n",
+ " Reference Count: \u001b[1;36m1\u001b[0m\n",
+ " Modified Time: \u001b[1;36m683\u001b[0m\n",
+ " Debug: Off\n",
+ " Object Name: \n",
+ " Observers: \n",
+ " none\n",
+ " Pointer: \u001b[1;36m0x7fd392400010\u001b[0m\n",
+ " Container manages memory: true\n",
+ " Size: \u001b[1;36m28835840\u001b[0m\n",
+ " Capacity: \u001b[1;36m28835840\u001b[0m\n",
+ "\n"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
"source": [
- "## Head MRA"
+ "print(ct_image)"
]
},
{
@@ -317,9 +902,13 @@
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": null,
"id": "03988ee1-90eb-4e75-99af-2c56d932fad9",
- "metadata": { "tags": ["skip-execution"] },
+ "metadata": {
+ "tags": [
+ "skip-execution"
+ ]
+ },
"outputs": [],
"source": [
"head_image_file = pooch.retrieve('https://data.kitware.com/api/v1/file/61b61cd74acac99f42a7ec84/download',\n",
@@ -330,19 +919,23 @@
},
{
"cell_type": "code",
- "execution_count": 11,
+ "execution_count": 16,
"id": "091d4d0e-fdc5-4034-b6a5-a4d7350b98d5",
- "metadata": { "tags": ["skip-execution"] },
+ "metadata": {
+ "tags": [
+ "skip-execution"
+ ]
+ },
"outputs": [
{
"data": {
"text/html": [
"\n",
- " 
\n",
+ " 
\n",
" \n",
@@ -358,7 +951,7 @@
{
"data": {
"application/javascript": [
- "window.connectPlugin && window.connectPlugin(\"7a4d3388-37d8-410f-9cd2-0f4c8cb74f46\")"
+ "window.connectPlugin && window.connectPlugin(\"379402b6-f2f0-4950-9de8-882fc45c5249\")"
],
"text/plain": [
""
@@ -370,7 +963,7 @@
{
"data": {
"text/html": [
- ""
+ ""
],
"text/plain": [
""
@@ -383,14 +976,6 @@
"source": [
"head_viewer = view(head_image)"
]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "id": "0f4633af-fd01-4ab5-8202-3fb642276040",
- "metadata": { "tags": ["skip-execution"] },
- "outputs": [],
- "source": []
}
],
"metadata": {
@@ -412,7 +997,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.8.10"
+ "version": "3.11.8"
}
},
"nbformat": 4,
\n",
+ " \n",
+ " "
+ ],
+ "text/plain": [
+ "
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+ " \n",
+ " "
+ ],
+ "text/plain": [
+ "
\n",
+ " 
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" \n",
@@ -258,7 +570,7 @@
{
"data": {
"application/javascript": [
- "window.connectPlugin && window.connectPlugin(\"7a4d3388-37d8-410f-9cd2-0f4c8cb74f46\")"
+ "window.connectPlugin && window.connectPlugin(\"52f4fea9-6a18-48e8-bff1-4edacb82e340\")"
],
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"