diff --git a/CHANGELOG.md b/CHANGELOG.md index 200b4d6ea..85ee533dc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,62 @@ # Changelog +## v2.6.0 (17/11/2022) + +#### New components + +- [**new component**] Add GNP Multiplier for PMC DB Reader [#152](https://github.com/JULIELab/jcore-base/issues/152) +- [**new component**] Add GNP multipliers for XMI and XML DB multiplier readers [#150](https://github.com/JULIELab/jcore-base/issues/150) +- [**new component**] Add a GNormPlus UIMA component [#147](https://github.com/JULIELab/jcore-base/issues/147) +- [**new component**] Add reader for NLM-Gene [#145](https://github.com/JULIELab/jcore-base/issues/145) +- [**new component**] Add an MMAX2 reader. [#136](https://github.com/JULIELab/jcore-base/issues/136) +- [**new component**] Add GNormPlus BioC XML reader [#131](https://github.com/JULIELab/jcore-base/issues/131) +- [**new component**] Add a GNormPlus BioC Writer [#129](https://github.com/JULIELab/jcore-base/issues/129) +- [**new component**] Add a PMC DB Reader [#128](https://github.com/JULIELab/jcore-base/issues/128) +- [**new component**] Add a consumer to write relations to Neo4j [#113](https://github.com/JULIELab/jcore-base/issues/113) +- [**new component**] Add an embedding writer [#102](https://github.com/JULIELab/jcore-base/issues/102) +- [**new component**] Add a Flair embedding adding component [#101](https://github.com/JULIELab/jcore-base/issues/101) +- [**new component**] Add a FLAIR NER component [#100](https://github.com/JULIELab/jcore-base/issues/100) + +#### General Enhancements + +- [**enhancement**] Add an annotation remover. [#154](https://github.com/JULIELab/jcore-base/issues/154) +- [**enhancement**] Add a truncation size parameter to PMC XML multipliers [#153](https://github.com/JULIELab/jcore-base/issues/153) +- [**enhancement**] Allow regular expression feature value filters for EntityConsumer [#146](https://github.com/JULIELab/jcore-base/issues/146) +- [**enhancement**] Add H2-based annotation source for AnnotationAdder [#138](https://github.com/JULIELab/jcore-base/issues/138) +- [**enhancement**] Add a feature-based format to the annotation adder [#137](https://github.com/JULIELab/jcore-base/issues/137) +- [**enhancement**] Let GNP BioC writer add Gene annotations. [#134](https://github.com/JULIELab/jcore-base/issues/134) +- [**enhancement**] Implement max XMI ID retrieval for the BioC GNormPlus Reader [#133](https://github.com/JULIELab/jcore-base/issues/133) +- [**enhancement**] Add a mechanism to avoid mirror subset reset for updated JeDIS document whose text hasn't changed [#130](https://github.com/JULIELab/jcore-base/issues/130) +- [**enhancement**] PMCReader: Add option to omit bibliographical references [#127](https://github.com/JULIELab/jcore-base/issues/127) + +#### Bug Fixes + +- [**bug**] Fix a bug where half of the DBMultiplierReader IDs were not actually processed [#144](https://github.com/JULIELab/jcore-base/issues/144) +- [**bug**] ESConsumer: Fix bugs with cache index when resource file is updated [#126](https://github.com/JULIELab/jcore-base/issues/126) +- [**bug**] Fix Bug in JSBD where Cut Away Types can still be included in the begin of a sentence. [#125](https://github.com/JULIELab/jcore-base/issues/125) +- [**bug**] JSBD: Fix bug that occurs when cut away types and sentence delimiter types are given [#121](https://github.com/JULIELab/jcore-base/issues/121) + +#### Miscellaneous Changes + +- [**closed**] Map payloads to features for AnnotationAdder [#124](https://github.com/JULIELab/jcore-base/issues/124) +- [**closed**] ES Consumer: Provide persistent Map and Addon terms providers [#123](https://github.com/JULIELab/jcore-base/issues/123) +- [**closed**] Add a flow controller that creates a flow based on a CAS annotation [#120](https://github.com/JULIELab/jcore-base/issues/120) +- [**closed**] JCoreOverlapIndex: Return the list instead of a stream [#117](https://github.com/JULIELab/jcore-base/issues/117) +- [**closed**] lingpipe gazetteer: fix offset issues [#116](https://github.com/JULIELab/jcore-base/issues/116) + +--- + +## v2.5.0 (13/05/2020) +This release of JCoRe includes a lot of fixes, small enhancements and updated dependency libraries. +The employed UIMA version is 2.10.4. +New components include +* JCoRe Flair NER AE +* JCoRe Flair Embedding AE +* JCoRe Cord19 Reader + +and more. +--- + ## v2.4.0 (29/03/2019) This release sees quite a few bug fixes and streamline in various components. Most importantly, there are a few new components: