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diff --git a/docs/_build/doctrees/index.doctree b/docs/_build/doctrees/index.doctree
index 66779ad..1530293 100644
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diff --git a/docs/_build/html/_sources/index.rst.txt b/docs/_build/html/_sources/index.rst.txt
index 9bc3de7..2610f5b 100644
--- a/docs/_build/html/_sources/index.rst.txt
+++ b/docs/_build/html/_sources/index.rst.txt
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    :caption: Contents:
 
-   modules
+   poke
    notebooks/installation.ipynb
    notebooks/rayfrontattributes.ipynb
    notebooks/introtopolarization.ipynb
diff --git a/docs/_build/html/genindex.html b/docs/_build/html/genindex.html
index 8a3dfc8..8ad1b99 100644
--- a/docs/_build/html/genindex.html
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               <p class="caption"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="modules.html">poke</a></li>
+<li class="toctree-l1"><a class="reference internal" href="poke.html">poke package</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/rayfrontattributes.html">Intro to Poke: The Rayfront</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/introtopolarization.html">Intro to Poke: Polarization Ray Tracing</a></li>
diff --git a/docs/_build/html/index.html b/docs/_build/html/index.html
index 20206c2..5c36561 100644
--- a/docs/_build/html/index.html
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-    <link rel="next" title="poke" href="modules.html" /> 
+    <link rel="next" title="poke package" href="poke.html" /> 
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               <p class="caption"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="modules.html">poke</a></li>
+<li class="toctree-l1"><a class="reference internal" href="poke.html">poke package</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/rayfrontattributes.html">Intro to Poke: The Rayfront</a></li>
 <li class="toctree-l1"><a class="reference internal" href="notebooks/introtopolarization.html">Intro to Poke: Polarization Ray Tracing</a></li>
@@ -110,8 +110,16 @@ <h2>Summary<a class="headerlink" href="#summary" title="Permalink to this headli
 <div class="toctree-wrapper compound">
 <p class="caption"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="modules.html">poke</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="poke.html">poke package</a></li>
+<li class="toctree-l1"><a class="reference internal" href="poke.html">poke package</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#submodules">Submodules</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke.poke_core">poke.poke_core module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke.poke_math">poke.poke_math module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke.raytrace">poke.raytrace module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke.plotting">poke.plotting module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke.polarization">poke.polarization module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke.thinfilms">poke.thinfilms module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke.writing">poke.writing module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="poke.html#module-poke">Module contents</a></li>
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            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="modules.html" class="btn btn-neutral float-right" title="poke" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="poke.html" class="btn btn-neutral float-right" title="poke package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
diff --git a/docs/_build/html/py-modindex.html b/docs/_build/html/py-modindex.html
index bb7905d..04b6530 100644
--- a/docs/_build/html/py-modindex.html
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-<li class="toctree-l1"><a class="reference internal" href="modules.html">poke</a></li>
+<li class="toctree-l1"><a class="reference internal" href="poke.html">poke package</a></li>
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diff --git a/docs/_build/html/search.html b/docs/_build/html/search.html
index 00b21ef..dfaab9c 100644
--- a/docs/_build/html/search.html
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-<li class="toctree-l1"><a class="reference internal" href="modules.html">poke</a></li>
+<li class="toctree-l1"><a class="reference internal" href="poke.html">poke package</a></li>
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 <li class="toctree-l1"><a class="reference internal" href="notebooks/introtopolarization.html">Intro to Poke: Polarization Ray Tracing</a></li>
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0,3,6,10],research:2,reshap:[],resourc:9,respect:7,respons:[6,10],result:[6,9],return_cub:[],rf:[3,6,7,8,10],right:3,robust:5,rodriguez:9,rotat:[5,6,10],rotation3d:10,rotation_3d:10,routin:5,row:10,rp:9,rs:9,rt:[],rtld_global:[],rule:[],run:10,runtim:10,runtimeconstructorinfo:[],runtimeerror:[],runtimefieldhandleintern:[],runtimetyp:[],runtimewarn:6,s13:[],s1:5,s2:5,s3:[],s:[3,5,7,8,9,10],same:10,sample_rayfront:8,san:9,save:[6,10],scalar:6,scatter:[5,7,8],scatterplot:7,scienc:6,science_imag:6,science_image_1:6,science_image_2:6,scipi:9,script:[],search:0,secondari:[5,6],secondary_radiu:6,section:5,secur:[],see:9,seen:6,select:9,self:10,semi:5,send:[0,9],sep:2,seq:10,sequenti:[0,5,10],serdat:10,serial:10,serif:9,set:[0,3,5,6,9],set_aspect:8,set_backend_to_cupi:10,set_backend_to_jax:10,set_backend_to_numpi:10,set_runtim:[],set_runtime_from_env:[],set_signal_chain:[],set_titl:[6,8],set_xtick:[6,8],set_xticklabel:8,set_ytick:[6,8],set_yticklabel:8,sgen:[],shape:[3,5,6,8,10],shim:10,should:10,show:[3,5,6,7,8,9],shown:7,sign:9,signal:6,signatur:[],silver:5,simmilar:6,simpl:[3,5,7,9],simpli:[3,6],simul:[0,6],sin:9,sinc:8,singl:10,singular:5,site:[],size:[8,9],skip_head:9,slightli:5,small:6,so:[3,5,6,9],softwar:[0,5],sole:7,solv:5,some:[5,6,9],sourc:[0,2,4,6],space:3,spec:[],specifi:[5,10],spin:10,splitter:0,spot:8,squar:10,src:10,stack:[5,9,10],stai:6,standard:5,star:6,start:[3,5,6,9,10],state:[6,10],step:9,still:[],stoke:10,stokes_vector:[],stokes_vector_planet:6,store:5,str:10,string:10,stronger:9,structur:10,style:9,submodul:[0,1,5],subplot:[5,6,8],substrat:[5,9,10],substrate_index:[9,10],successfulli:7,sum:[6,9],suppli:5,support:[5,6,7,9,10],support_angl:6,support_offset_x:6,support_width:6,suptitl:6,sure:3,surf:[5,6,7,8,10],surfac:[5,6,7,8,10],surfdict:10,surflist:[5,10],swap:10,system:[0,5,6,7,10],system_prt_matric:10,t0:[],t1:[],t:[5,6,9,10],taken:10,tamper:[],taylor:9,telescop:[],telescope_apertur:8,tell:[5,10],terribl:9,test:[3,7],test_fil:[3,5],test_poke_math:[],test_rotation3d:[],textbf:3,tf:10,than:9,thei:[5,6,9,10],them:[5,6,10],theori:3,thesystem:[],thi:[0,2,3,5,7,9,10],thick:9,thickness_1:9,thickness_2:9,thickness_n:9,thin:[0,5,10],thinfilm:[0,1,9],three:5,through:[0,5,7,10],throught:[],tilt:10,time:0,titl:[2,5,6,7,8,9],titles:9,tmt:6,tmt_rayfront_hene_256rai:6,tn:[],todo:3,tolist:6,too:5,tool:7,toolkit:7,toplot:8,tostr:[],total:[7,10],total_pow:6,total_prt_matrix:10,trace:[0,7,9,10],trace_rayset:[5,10],trace_through_cv:10,trace_through_zo:10,traceback:[],tracer:7,traceraysetcv:[],traceraysetzo:[],tracerayszo:[],tracethroughcv:10,tracethroughzo:[],transform:[3,6,10],transmiss:[5,9],transmit:5,transport:10,transpos:[],treat:6,tri:[],trick:10,tricki:6,tupl:[9,10],turn:5,tutori:5,two:[6,8,9,10],type:[3,10],typic:10,u:[6,10],ufunc:[],un:5,unders:5,understand:9,unfortun:9,unit:[6,10],uniti:[],unnecessari:[],unpickl:[],unpolar:[6,10],untest:10,until:[],untrust:[],up:[3,5,6,9],updat:[7,9],us:[0,2,3,4,5,7,9,10],user:[3,5,6,7,9],util:[3,4,7],v0:2,v:[5,6,7,9,10],vacuum_index:[],valid:6,valu:[6,10],variabl:[],ve:9,vector:[3,6,10],vector_angl:10,vector_norm:10,vectorangl:10,versa:10,version:9,via:[],vice:10,view:7,vignet:5,vignett:10,viridi:[],vmax:[6,8],vmax_amp:[],vmax_opd:[],vmin:[6,8],vmin_amp:[],vmin_opd:[],wa:[7,9],wai:7,waist:10,waist_pad:10,want:[3,5,9,10],ware:9,warn:5,was_default:[],wasn:5,wave:[7,9,10],wavefront:[0,7,8],wavelegnth:10,wavelength:[5,6,7,9,10],we:[2,3,5,6,7,9,10],were:9,wf:6,wf_planet:6,wf_star:6,wflist:6,what:[0,3,6,9],when:5,where:10,whether:10,which:[5,6,7,10],winreg:[],wish:10,without:9,wlen:6,wo:10,work:[2,10],would:2,write:[0,1,3,6,7,8],write_rayfront_to_seri:10,writefieldtofit:[],writejonespupiltofit:[],writematrixtofit:[],writeprtmatrixtofit:[],written:10,wrn:[],wvl:9,wx:[],wy:[],x1:10,x2:10,x:[3,5,6,7,8,9,10],x_ep:7,x_m4:7,xdata:[5,7,8,10],xi:3,xlabel:[7,8,9],xlim:8,xn:10,xtick:9,xx:6,xy:6,xytext:6,y1:10,y2:10,y:[3,5,6,7,8,10],y_ep:7,y_m4:7,ydata:[5,7,8,10],year:2,yet:6,ylabel:[7,8,9],ylim:8,yn:10,you:[2,4,5,10],young:[5,10],your:[2,5,9],ytick:9,yx:6,yy:6,z:[5,10],zdata:[5,10],zemax:[0,5,10],zenodo:2,zero:[9,10],zip:6,zmx:10,zo:[6,10],zosapi:4,zosapi_interfac:[]},titles:["Welcome to poke\u2019s documentation!","poke","About Poke","Generate an Amplitude Response Matrix from a Rayfront","Installation","Intro to Poke: Polarization Ray Tracing","Generating a Jones Pupil and propagating it with HCIPy &amp; Poppy","Intro to Poke: The Rayfront","&lt;no title&gt;","Simulating Multilayer Thin Films","poke package"],titleterms:{"try":[],For:[],The:7,about:2,abov:6,acknowledg:2,amplitud:3,an:3,beam:6,been:[],below:[],cite:2,code:[],comput:6,content:[0,10],data:6,depend:[],descript:[],diagram:7,displai:7,document:0,excel:[],field:[],film:9,footprint:7,fraunhof:6,from:[3,6],full:[],gbd:[],gen_rayset:[],gener:[3,6],great:[],have:[],hcipi:6,impos:[],incom:[],indic:0,initi:5,instal:4,intro:[5,7],ipython:[],jone:6,let:6,linear:6,made:[],matrix:3,modul:10,multilay:9,now:6,opd:7,open:[],optic:[],our:6,packag:10,partial:[],pass:6,pickl:[],plot:10,poke:[0,1,2,5,7,10],poke_cor:10,poke_math:10,polar:[5,6,10],poppi:6,pre:[],problem:[],propag:6,pupil:6,rai:[5,7],raybundle_polar:[],rayfront:[3,5,7],rayset:[],raytrac:10,requir:4,respons:3,s:[0,6],same:[],script:[],send:6,simul:9,splitter:6,still:[],submodul:10,summari:0,system:[],tabl:0,test_poke_math:[],thi:6,thin:9,thinfilm:10,through:6,throught:[],time:6,trace:5,transform:[],us:6,wavefront:6,we:[],welcom:0,work:[],write:10,zosapi:[]}})
\ No newline at end of file
diff --git a/docs/index.rst b/docs/index.rst
index 9bc3de7..2610f5b 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -20,7 +20,7 @@ Summary
    :maxdepth: 2
    :caption: Contents:
 
-   modules
+   poke
    notebooks/installation.ipynb
    notebooks/rayfrontattributes.ipynb
    notebooks/introtopolarization.ipynb
