sources jar

Author: olegs

build.gradle

@@ -15,15 +15,12 @@ buildscript {
     }
 }
 
-plugins {
-    id 'com.jfrog.bintray' version '1.6'
-}
-
 repositories {
     jcenter()
 }
 
 apply plugin: 'kotlin'
+apply plugin: 'com.github.johnrengelman.shadow'
 
 sourceCompatibility = 1.8
 targetCompatibility = sourceCompatibility
@@ -73,6 +70,34 @@ test {
     include '**/*Test.class'
 }
 
+task sourcesJar(type: Jar) {
+    classifier = 'sources'
+    from sourceSets.main.allSource
+}
+
+artifacts {
+    archives sourcesJar
+}
+
+shadowJar {
+    // File name: "$baseName-$version-$classifier.jar"
+    baseName = 'span'
+    version = "${version}.${project.buildCounter}"
+    classifier = ''
+    minimize {
+        // Fix log4j:ERROR Could not instantiate class [org.apache.log4j.xml.DOMConfigurator]
+        exclude(dependency('log4j:log4j:1.2.17'))
+    }
+}
+
+jar {
+    manifest {
+        attributes provider: 'gradle'
+        attributes 'Application-Name': "SPAN $version"
+        attributes 'Built-By': 'JetBrains Research TeamCity'
+    }
+}
+
 task wrapper(type: Wrapper) {
     gradleVersion = '4.10'
 }

gradle.properties

@@ -1,2 +1,7 @@
-groupId=org.jetbrains.bio
+org.gradle.configureondemand=true
+org.gradle.parallel=true
+kotlin.incremental=true
 version=0.0.1
+# Project version, e.g. default for tools like SPAN peak analyzer and JBR genome browser
+# Can be overridden during build using `./gradlew -Pversion=1.0 my_task_name`
+buildCounter=build