Cannot find omh_compare_sketch.hpp

[pesho-ivanov]

I see that omh_compare_sketch.hpp is included in omh_compare_sketch.cc but I cannot find it. Could you please check that out? Thank you

[gmarcais]

Download the release tarball instead of the git tree, it is a complete source tar ball that can be compiled with ./configure && make, without needing to install any dependencies: https://github.com/Kingsford-Group/omhismb2019/releases/tag/v0.0.2 .

Otherwise, if working from the git tree, that header file is generated by YAGGO. Make sure it is installed (apt install yaggo on Ubuntu, gem install yaggo to install using the Ruby packaging system on any system).

Then it will be generated automatically during compilation. See that configure finds your executable :

> ./configure
[...]
checking for yaggo... /path/to/bin/yaggo
[...]
> make
make: Entering directory '/some/path'
  YAGGO    omh_compare_sketch.hpp
  YAGGO    omh_compare_exact_seq.hpp
  YAGGO    omh_compare_sketches.hpp
[...]

[pesho-ivanov]

Thank you! I indeed didn't expect those to be generated.