Skip to content

Commit 5958dfe

Browse files
committed
update IMAM to v1.0.3
1 parent be0dea7 commit 5958dfe

File tree

2 files changed

+3
-3
lines changed

2 files changed

+3
-3
lines changed

posts/IMAM-02-preparation.qmd

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -19,10 +19,10 @@ This workflow is distributed as a self-contained Singularity container image, wh
1919
The singularity container needs an image file to activate the precompiled work environment. You can download the required workflow image file (imam_workflow.sif) directly through the terminal via:
2020

2121
``` bash
22-
wget https://github.com/LucvZon/illumina-metagenomic-analysis-manual/releases/download/v1.0.2/imam_workflow.sif
22+
wget https://github.com/LucvZon/illumina-metagenomic-analysis-manual/releases/download/v1.0.3/imam_workflow.sif
2323
```
2424

25-
Or go to the [github page](https://github.com/LucvZon/illumina-metagenomic-analysis-manual/releases/tag/v1.0.2){target="_blank"} and manually download it there, then transfer it to your HPC system.
25+
Or go to the [github page](https://github.com/LucvZon/illumina-metagenomic-analysis-manual/releases/tag/v1.0.3){target="_blank"} and manually download it there, then transfer it to your HPC system.
2626

2727
## 1.3 Verify container {.unnumbered}
2828

posts/IMAM-05-annotation.qmd

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -4,7 +4,7 @@
44

55
Now we will annotate the aggregated contigs by assigning taxonomic classifications to them based on sequence similarity to known proteins in a database using [diamond blastx](https://github.com/bbuchfink/diamond){target="_blank"}.
66

7-
Please take note of the following blastx parameters: `-f (--outfmt)`, `-b (--block-size)` and `-c (--index-chunks)`, documentation can be found [here](http://diamondsearch.org/forums/index.php?pages/command_line_options/){target="_blank"}.
7+
Please take note of the following blastx parameters: `-f (--outfmt)`, `-b (--block-size)` and `-c (--index-chunks)`, documentation can be found [here](https://github.com/bbuchfink/diamond/wiki/3.-Command-line-options){target="_blank"}.
88

99
The `-f 6` parameter will ensure the output is in a tabular format. The `6` may be followed by a space-separated list of various keywords, each specifying a field of the output.
1010

0 commit comments

Comments
 (0)