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model.py
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156 lines (127 loc) · 4.52 KB
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import torch
import torch.nn as nn
import torch.nn.functional as F
class DoubleConv(nn.Module):
def __init__(self, in_channels, out_channels, mid_channels=None):
super().__init__()
if not mid_channels:
mid_channels = out_channels
self.double_conv = nn.Sequential(
nn.Conv3d(in_channels, mid_channels, kernel_size=3, padding=1, bias=False),
nn.BatchNorm3d(mid_channels),
nn.ReLU(inplace=True),
nn.Conv3d(mid_channels, out_channels, kernel_size=3, padding=1, bias=False),
nn.BatchNorm3d(out_channels),
nn.ReLU(inplace=True)
)
def forward(self, x):
return self.double_conv(x)
class Down(nn.Module):
def __init__(self, in_channels, out_channels):
super().__init__()
self.maxpool_conv = nn.Sequential(
nn.MaxPool3d(2),
DoubleConv(in_channels, out_channels)
)
def forward(self, x):
return self.maxpool_conv(x)
class Up(nn.Module):
def __init__(self, in_channels, out_channels, trilinear=True):
super().__init__()
if trilinear:
self.up = nn.Upsample(scale_factor=2, mode='trilinear', align_corners=True)
self.conv = DoubleConv(in_channels, out_channels, in_channels // 2)
else:
self.up = nn.ConvTranspose3d(
in_channels,
in_channels // 2,
kernel_size=2,
stride=2
)
self.conv = DoubleConv(in_channels, out_channels)
def forward(self, x1, x2):
x1 = self.up(x1)
diffD = x2.size()[2] - x1.size()[2]
diffH = x2.size()[3] - x1.size()[3]
diffW = x2.size()[4] - x1.size()[4]
x1 = F.pad(
x1,
[
diffW // 2, diffW - diffW // 2,
diffH // 2, diffH - diffH // 2,
diffD // 2, diffD - diffD // 2
]
)
x = torch.cat([x2, x1], dim=1)
return self.conv(x)
class OutConv(nn.Module):
def __init__(self, in_channels, out_channels):
super().__init__()
self.conv = nn.Conv3d(in_channels, out_channels, kernel_size=1)
def forward(self, x):
return self.conv(x)
class UNet(nn.Module):
def __init__(self, n_channels, n_classes, Hb=None, Wb=None, trilinear=False, bmodule=None):
super().__init__()
self.n_channels = n_channels
self.n_classes = n_classes
self.trilinear = trilinear
self.inc = DoubleConv(n_channels, 64)
self.down1 = Down(64, 128)
self.down2 = Down(128, 256)
self.down3 = Down(256, 512)
factor = 2 if trilinear else 1
self.down4 = Down(512, 1024 // factor)
self.bmodule = bmodule
self.up1 = Up(1024, 512 // factor, trilinear)
self.up2 = Up(512, 256 // factor, trilinear)
self.up3 = Up(256, 128 // factor, trilinear)
self.up4 = Up(128, 64, trilinear)
self.outc = OutConv(64, n_classes)
self.sigmoid = nn.Sigmoid()
def forward(self, x):
x1 = self.inc(x)
x2 = self.down1(x1)
x3 = self.down2(x2)
x4 = self.down3(x3)
x5 = self.down4(x4)
if self.bmodule:
x5 = self.bmodule(x5)
x = self.up1(x5, x4)
x = self.up2(x, x3)
x = self.up3(x, x2)
x = self.up4(x, x1)
logits = self.outc(x)
return logits
class UNet_small(nn.Module):
def __init__(self, n_channels, n_classes, Hb=None, Wb=None, trilinear=False, bmodule=None):
super().__init__()
self.n_channels = n_channels
self.n_classes = n_classes
self.trilinear = trilinear
self.inc = DoubleConv(n_channels, 16)
self.down1 = Down(16, 32)
self.down2 = Down(32, 64)
self.down3 = Down(64, 128)
factor = 2 if trilinear else 1
self.down4 = Down(128, 256 // factor)
self.bmodule = bmodule
self.up1 = Up(256, 128 // factor, trilinear)
self.up2 = Up(128, 64 // factor, trilinear)
self.up3 = Up(64, 32 // factor, trilinear)
self.up4 = Up(32, 16, trilinear)
self.outc = OutConv(16, n_classes)
def forward(self, x):
x1 = self.inc(x)
x2 = self.down1(x1)
x3 = self.down2(x2)
x4 = self.down3(x3)
x5 = self.down4(x4)
if self.bmodule:
x5 = self.bmodule(x5)
x = self.up1(x5, x4)
x = self.up2(x, x3)
x = self.up3(x, x2)
x = self.up4(x, x1)
logits = self.outc(x)
return logits