From 175c127c87d896753ee7968e1b73cb03e6a2a8b1 Mon Sep 17 00:00:00 2001
From: Zachary Moon <zmoon92@gmail.com>
Date: Wed, 17 Jul 2024 17:29:01 -0400
Subject: [PATCH 1/4] Fix 2008/09 pub links

---
 publications.html | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/publications.html b/publications.html
index a39fa5a..c7297a7 100644
--- a/publications.html
+++ b/publications.html
@@ -617,7 +617,7 @@
 				<td><strong>2009</strong></td>
 			</tr>
 			<tr>
-				<td>Thuburn, J., T. Ringler, J. Klemp and W. Skamarock, 2009: Numerical representation of geostrophic modes on arbitrarily structured C-grids, Journal of Computational Physics, 2009: 228 (22), 8321-8335. <a href="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WHY-4X1J78X-2&_user=2493154&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000057551&_version=1&_urlVersion=0&_userid=2493154&md5=7b0f9e6bbbf8712ebc27cd213f0d07fe" target="_blank">doi:10.1016/j.jcp.2009.08.006</a></td>
+				<td>Thuburn, J., T. Ringler, J. Klemp and W. Skamarock, 2009: Numerical representation of geostrophic modes on arbitrarily structured C-grids, Journal of Computational Physics, 2009: 228 (22), 8321-8335. <a href="https://doi.org/10.1016/j.jcp.2009.08.006" target="_blank">doi:10.1016/j.jcp.2009.08.006</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>
@@ -629,7 +629,7 @@
 				<td><strong>2008</strong></td>
 			</tr>
 			<tr>
-				<td>Ringler, T., L. Ju and M. Gunzburger, 2008, A multiresolution method for climate system modeling: application of spherical centroidal Voronoi tessellations, Ocean Dynamics, 58 (5-6), 475-498. <a href="http://www.springerlink.com/content/0850h10688360850/" target="_blank">doi:10.1007/s10236-008-0157-2</a></td>
+				<td>Ringler, T., L. Ju and M. Gunzburger, 2008, A multiresolution method for climate system modeling: application of spherical centroidal Voronoi tessellations, Ocean Dynamics, 58 (5-6), 475-498. <a href="https://doi.org/10.1007/s10236-008-0157-2" target="_blank">doi:10.1007/s10236-008-0157-2</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>

From b0f2d51b549f5b77c96915f420e15c781d3f9ac6 Mon Sep 17 00:00:00 2001
From: zmoon <zmoon92@gmail.com>
Date: Wed, 17 Jul 2024 16:34:21 -0500
Subject: [PATCH 2/4] Fix another early one

---
 publications.html | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/publications.html b/publications.html
index c7297a7..7b43ea6 100644
--- a/publications.html
+++ b/publications.html
@@ -641,13 +641,13 @@
 				<td><strong>2003</strong></td>
 			</tr>
 			<tr>
-				<td>Du, Q., M. Gunzburger and L. Ju, 2003, Constrained centroidal Voronoi tessellations for surfaces, SIAM Journal on Scientific Computing,  24, 1488-1506. <a href="http://dx.doi.org/10.1137/S1064827501391576 " target="_blank">doi:10.1137/S1064827501391576</a></td>
+				<td>Du, Q., M. Gunzburger and L. Ju, 2003, Constrained centroidal Voronoi tessellations for surfaces, SIAM Journal on Scientific Computing,  24, 1488-1506. <a href="http://dx.doi.org/10.1137/S1064827501391576" target="_blank">doi:10.1137/S1064827501391576</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>
 			</tr>
 			<tr>
-				<td>Du, Q., M. Gunzburger, L. Ju, 2003, Voronoi-based finite volume methods, optimal Voronoi meshes, and PDEs on the sphere, Computer Methods in Applied Mechanics and Engineering, 2003, 192, 3933-3957. <a href="doi:10.1016/S0045-7825(03)00394-3" target="_blank">doi:10.1016/S0045-7825(03)00394-3</a></td>
+				<td>Du, Q., M. Gunzburger, L. Ju, 2003, Voronoi-based finite volume methods, optimal Voronoi meshes, and PDEs on the sphere, Computer Methods in Applied Mechanics and Engineering, 2003, 192, 3933-3957. <a href="https://doi.org/10.1016/S0045-7825(03)00394-3" target="_blank">doi:10.1016/S0045-7825(03)00394-3</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>

From 8fe59b37aba836e9bb8bd47236bd7625a6307143 Mon Sep 17 00:00:00 2001
From: zmoon <zmoon92@gmail.com>
Date: Wed, 17 Jul 2024 16:35:22 -0500
Subject: [PATCH 3/4] dx.doi.org -> doi.org

---
 publications.html | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/publications.html b/publications.html
index 7b43ea6..55b68af 100644
--- a/publications.html
+++ b/publications.html
@@ -574,7 +574,7 @@
 			<tr>
 				<td>
 					A Terrain-Following Coordinate with Smoothed Coordinate Surfaces. Joseph B. Klemp, 2011,  Monthly Weather Review, 139(7), 2163–2169.
-					<a href="http://dx.doi.org/10.1175/MWR-D-10-05046.1" target="_blank">doi:10.1175/MWR-D-10-05046.1</a>
+					<a href="http://doi.org/10.1175/MWR-D-10-05046.1" target="_blank">doi:10.1175/MWR-D-10-05046.1</a>
 				</td>
 			</tr>
 			<tr>
@@ -599,7 +599,7 @@
 				<td><strong>2010</strong></td>
 			</tr>
 			<tr>
-				<td>Ringler, T., J. Thuburn, J. Klemp and W. Skamarock, 2010: A unified approach to energy conservation and potential vorticity dynamics on arbitrarily structured C-grids, Journal of Computational Physics, published online, <a href="http://dx.doi.org/10.1016/j.jcp.2009.12.007" target="_blank">doi:10.1016/j.jcp.2009.12.007</a></td>
+				<td>Ringler, T., J. Thuburn, J. Klemp and W. Skamarock, 2010: A unified approach to energy conservation and potential vorticity dynamics on arbitrarily structured C-grids, Journal of Computational Physics, published online, <a href="http://doi.org/10.1016/j.jcp.2009.12.007" target="_blank">doi:10.1016/j.jcp.2009.12.007</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>
@@ -641,7 +641,7 @@
 				<td><strong>2003</strong></td>
 			</tr>
 			<tr>
-				<td>Du, Q., M. Gunzburger and L. Ju, 2003, Constrained centroidal Voronoi tessellations for surfaces, SIAM Journal on Scientific Computing,  24, 1488-1506. <a href="http://dx.doi.org/10.1137/S1064827501391576" target="_blank">doi:10.1137/S1064827501391576</a></td>
+				<td>Du, Q., M. Gunzburger and L. Ju, 2003, Constrained centroidal Voronoi tessellations for surfaces, SIAM Journal on Scientific Computing,  24, 1488-1506. <a href="http://doi.org/10.1137/S1064827501391576" target="_blank">doi:10.1137/S1064827501391576</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>
@@ -659,7 +659,7 @@
 				<td><strong>2002</strong></td>
 			</tr>
 			<tr>
-				<td>Ju, L., Q. Du and M. Gunzburger, 2002, Probabilistic methods for centroidal Voronoi tessellations and their parallel implementations, Parallel Computing, 28, 1477-1500. <a href="http://dx.doi.org/doi:10.1016/S0167-8191(02)00151-5" target="_blank">doi:10.1016/S0167-8191(02)00151-5</a></td>
+				<td>Ju, L., Q. Du and M. Gunzburger, 2002, Probabilistic methods for centroidal Voronoi tessellations and their parallel implementations, Parallel Computing, 28, 1477-1500. <a href="http://doi.org/doi:10.1016/S0167-8191(02)00151-5" target="_blank">doi:10.1016/S0167-8191(02)00151-5</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>
@@ -671,7 +671,7 @@
 				<td><strong>1999</strong></td>
 			</tr>
 			<tr>
-				<td>Du, Q., V. Faber and M. Gunzburger, 1999, Centroidal Voronoi tessellations: Applications and algorithms, SIAM Review, 41, 637-676. <a href="http://dx.doi.org/10.1137/S0036144599352836 " target="_blank">doi:10.1137/S0036144599352836</a></td>
+				<td>Du, Q., V. Faber and M. Gunzburger, 1999, Centroidal Voronoi tessellations: Applications and algorithms, SIAM Review, 41, 637-676. <a href="http://doi.org/10.1137/S0036144599352836 " target="_blank">doi:10.1137/S0036144599352836</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>

From 68e6beda5dcde0eadc1a81620cf5e8ebdffc9787 Mon Sep 17 00:00:00 2001
From: zmoon <zmoon92@gmail.com>
Date: Wed, 17 Jul 2024 16:51:42 -0500
Subject: [PATCH 4/4] Replace two bad "PDF" links by DOI

---
 publications.html | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/publications.html b/publications.html
index 55b68af..d8aa782 100644
--- a/publications.html
+++ b/publications.html
@@ -149,8 +149,7 @@
                                 <td>
                                     Hsu, L., L. Tseng, S. Hou, B. Chen, and C. Sui, 2020: A Simulation Study of Kelvin Waves
                                     Interacting with Synoptic Events during December 2016 in the South China Sea and Maritime
-                                    Continent. J. Climate, 33, 6345–6359, https://doi.org/10.1175/JCLI-D-20-0121.1.
-                                    (<a href="https://journals.ametsoc.org/jcli/article/33/15/6345/346688/A-Simulation-Study-of-Kelvin-Waves-Interacting" target="_blank">pdf</a>)
+                                    Continent. J. Climate, 33, 6345–6359. <a href="https://doi.org/10.1175/JCLI-D-20-0121.1" target="_blank">doi:10.1175/JCLI-D-20-0121.1</a>
                                 </td>
 			</tr>
 			<tr>
@@ -183,8 +182,7 @@
 			<tr>
                                 <td>
                                     Schwartz, C. S., 2019: Medium-Range Convection-Allowing Ensemble Forecasts with a Variable-Resolution
-                                    Global Model. Mon. Wea. Rev., 147, 2997-3023. doi: 10.1175/MWR-D-18-0452.1
-                                    (<a href="https://journals.ametsoc.org/mwr/article/147/8/2997/344627/Medium-Range-Convection-Allowing-Ensemble" target="_blank">pdf</a>)
+                                    Global Model. Mon. Wea. Rev., 147, 2997-3023. <a href="https://doi.org/10.1175/MWR-D-18-0452.1" target="_blank">doi:10.1175/MWR-D-18-0452.1</a>
                                 </td>
 			</tr>
 			<tr>
@@ -671,7 +669,7 @@
 				<td><strong>1999</strong></td>
 			</tr>
 			<tr>
-				<td>Du, Q., V. Faber and M. Gunzburger, 1999, Centroidal Voronoi tessellations: Applications and algorithms, SIAM Review, 41, 637-676. <a href="http://doi.org/10.1137/S0036144599352836 " target="_blank">doi:10.1137/S0036144599352836</a></td>
+				<td>Du, Q., V. Faber and M. Gunzburger, 1999, Centroidal Voronoi tessellations: Applications and algorithms, SIAM Review, 41, 637-676. <a href="http://doi.org/10.1137/S0036144599352836" target="_blank">doi:10.1137/S0036144599352836</a></td>
 			</tr>
 			<tr>
 				<td>&nbsp;</td>