LICENSES_THIRD_PARTY

AbLEF uses third-party libraries which may be distributed under different 
licenses. We have attempted to list all of these third party libraries and 
their licenses below. 

You must agree to the terms of these licenses, in addition to the DSpace 
source code license, in order to use this software.

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Third party python libraries listed by License type
[Format: Name (scripts/package) - URL]
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MIT-0 License (http://opensource.org/licenses/MIT)
    * graph protein design (preprocess_graphs) - https://github.com/jingraham/neurips19-graph-protein-design
    * geometric vector perceptons (preprocess_graphs) - https://github.com/drorlab/gvp-pytorch/blob/main/gvp/data.py
    * lm-gvp (preprocess_graphs) - https://github.com/aws-samples/lm-gvp
    * torch_geometric - https://github.com/pyg-team/pytorch_geometric/blob/master/LICENSE 

Apache Software License, Version 2.0 (http://opensource.org/licenses/apache2.0)
    * BERT langauge model architecture (AbLEF) - https://github.com/google-research/bert
    * ProtBERT and ProtBERT-BFD (AbLEF) - https://huggingface.co/Rostlab
    * ray (train_tune) - https://github.com/ray-project/ray/blob/master/LICENSE
    * tensorboard (train_tune) - https://github.com/tensorflow/tensorboard/blob/master/LICENSE
    * tensorboard (train_tune) - 

GNU GPL 3 (https://www.gnu.org/licenses/gpl.txt)
    * Biomol2Clust (clusters) - https://biokinet.belozersky.msu.ru/Biomol2Clust

BSD License (http://www.opensource.org/licenses/bsd-license.php)
    * AbLang (AbLEF) - https://github.com/oxpig/AbLang
    * Biopython (AbLEF) - https://github.com/biopython/biopython/blob/master/LICENSE.rst
    * Pytorch (AbLEF) - https://github.com/intel/torch/blob/master/LICENSE.md
    * Sci-kit learn (clusters) - https://github.com/scikit-learn/scikit-learn/blob/main/COPYING
    * numpy (AbLEF) - https://github.com/numpy/numpy/blob/main/LICENSE.txt
    * anarci (preprocess) - https://github.com/oxpig/ANARCI/blob/master/LICENCE
    * pandas (preprocess) - https://github.com/pandas-dev/pandas/blob/main/LICENSE