stylesheet.css

.alignment {
  color: #212529;
  font-size: 0;
  cursor: default;
}

h2 {
  margin-top: 1em;
  margin-bottom: 0.5em;
}

#result {
    padding-bottom: 50px;
}

#results_table.grouped-by-ref .row-same-reference td {
    border-top: 0;
}

#results_table.grouped-by-ref .row-same-reference .ref-button {
    visibility: hidden;
}

#results_table td {
    vertical-align: middle;
}

#results_table_wrapper {
    margin-top: 20px;
}

/* Hide results table until it loads using DataTable */
#results_table {
    display: none;
}
#results_table_wrapper #results_table {
    display: table;
}

#results_table tr:hover {
  background-color: #ffffff;
}

.population-best {
    font-weight: bold;
}

.ref-button {
    min-width: 60px;
}

.no_mut {
  color: #000000;
}

.silent_mut {
  color: #0070fa;
  font-weight:bold;
  fill: #0070fa;
}

.mis_mut {
  color: #fc5e42;
  font-weight:bold;
  fill: #fc5e42;
}

.nons_mut {
  color: #6d23ad;
  font-weight:bold;
  fill: #6d23ad;
}

.frameshift {
  color: #fcbd28;
}

.mixed_peak {
  font-weight:bold;
  font-style: italic;
  text-decoration: underline;
}

.default-feature {
  opacity: 0.6;
}

.cds {
  opacity: 1;
}

.alignment .residue {
  font-size: 15px;
  display: inline-block;
  font-family: monospace;
  height: 23px;
  box-sizing: border-box;
  position: relative;
}

.alignment .residue[data-position] {
  cursor: pointer;
}

.residue {
    position: relative;
}
.residue:hover {
    font-weight: bold;
}

.codon-new.cds {
    border-bottom: 2px solid red;
}

.codon-ref.cds:after {
    content: "";
    position: absolute;
    top: 19px;
    left: 0px;
    height: 2px;
    width: 100%;
    display: inline-block;
    background: black;
}

.legend {
  border-radius: 8px;
  padding: 0px 6px;
  margin: 2px 0;
  min-width: 20px;
  text-align: center;
  display: inline-block;
  background-color: #f0f0f0;
}

.cov0 {
  background-color: #ffffff;
}

.cov1 {
  background-color: #d2ebfb;
}

.cov2 {
  background-color: #b0d1d5;
}

.cov3 {
  background-color: #86b1a5;
}

.cov4 {
  background-color: #669980;
}

#navPlot rect {
    cursor: pointer;
}

#navPlot rect.cov0 {
  fill: #f3f3f3;
}

#navPlot rect.cov1 {
  fill: #d2ebfb;
}

#navPlot rect.cov2 {
  fill: #b0d1d5;
}

#navPlot rect.cov3 {
  fill: #86b1a5;
}

#navPlot rect.cov4 {
  fill: #669980;
}

#navPlot rect.silent_mut {
  fill: #073cb5;
}

#navPlot rect.mis_mut {
  fill: #f55442;
}

#navPlot rect.nons_mut {
  fill: #fd1eff;
}

.navArrow {
    pointer-events:none;
}

.navArrow text {
    text-anchor: middle;
    font-size: 12px;
    fill: #666666;
    pointer-events:none;
    -webkit-user-select: none;
    -moz-user-select: none;
    -ms-user-select: none;
    user-select: none;
}

.codon-ref.cov0 {
  background-color: #f0f0f0;
}

.codon-ref.cov1 {
  background-color: #b6e0f0;
}

.codon-ref.cov2 {
  background-color: #b0c0f0;
}

.codon-ref.cov3 {
  background-color: #d0b0f0;
}

.codon-ref.cov4 {
  background-color: #f0b0d6;
}


.color-mutation-none {
  background-color: #baffbb !important;
}

.color-mutation-silent {
  background-color: #a2cafc !important;
}

.color-mutation-missense {
  background-color: #f5a590 !important;
}

.color-mutation-nonsense {
  background-color: #c19dfa !important;
}

.color-mutation-frameshift {
  background-color: #f5d99a !important;
}

.population-input:not(:nth-child(3n+1)) {
    padding-left: 40px;
}

.population-input:not(:last-child) {
    border-right: 1px solid #ddd;
}

.population-input .form-group {
    padding: 0 30px 0 0;
}

.badged-header {
    position: relative;
}

.badged-header .badge {
    position: absolute;
    top: 1px;
    left: -36px;
    width: 27px;
}

.form-group .badge {
    margin-top: 4px;
}

.label-required:after {
    content: " *";
    color: red;
}

td.details-control {
    background: url('../resources/details_open.png') no-repeat center center;
    cursor: pointer;
}
tr.shown td.details-control {
    background: url('../resources/details_close.png') no-repeat center center;
}
td.col-file-names {
    font-size: 90%
}

.tick rect {
    fill: #dddddd;
    cursor: pointer;
}
.refTick rect {
    opacity: 0.9;
}
.refTick rect:hover {
    opacity: 1;
}

.refTick text {
    text-anchor: middle;
    font-size: 13px;
    pointer-events: none;
}
.refTick text.refPosition {
    font-size: 12px;
    fill: #666666;
    font-weight: normal;
}
.refTick text.refTranslation {
    font-size: 12px;
    fill: #666666;
    font-weight: normal;
}

.refTick text, .traceTick text {
    pointer-events: none;
}

.line_G {
    fill: none;
    stroke: blue;
    stroke-width: 3;
}
.tick_G text {
    fill: white;
    font-weight: bold;
}
.tick_G rect {
    fill: blue;
}

.line_A {
    fill: none;
    stroke: #ee0011;
    stroke-width: 3;
}
.tick_A text {
    fill: white;
    font-weight: bold;
}
.tick_A rect {
    fill: #ee0011;
}

.line_T {
    fill: none;
    stroke: green;
    stroke-width: 3;
}
.tick_T text {
    fill: white;
    font-weight: bold;
}
.tick_T rect {
    fill: green;
}

.line_C {
    fill: none;
    stroke: #ffdd00;
    stroke-width: 3;
}
.tick_C text {
    fill: black;
    font-weight: bold;
}
.tick_C rect {
    fill: #ffdd00;
}

.tick_N rect {
    fill: #a6a6a6;
}

.tick_uni rect {
    fill: #d1d1d1;
}



.overlay {
  fill: none;
  pointer-events: all;
}

.x.axis .tick {
    font-size: 12px;
}

#refPlot {
   position: relative;
   overflow: hidden;
}

#refPlot:after {
    content: "";
    position: absolute;
    width: 100%;
    height: 200px;
    top: -50px;
    left: 0px;
    -moz-box-shadow:    inset 0 0 75px 20px white;
    -webkit-box-shadow: inset 0 0 75px 20px white;
    box-shadow:         inset 0 0 75px 20px white;
    pointer-events: none;
}

#traceNavigation {
    margin-left: 20px;
}

#traceRefTitle {
    cursor: default;
}

.plotTitle {
    font-size: 14px;
    text-anchor: middle;
}

@media print {
  #traceModal .modal-dialog {
    position:absolute;
    left:0;
    top:0;
    max-width: 100%;
    width: 100%;
  }
  .modal-backdrop {
    background-color: white !important;
    opacity: 1 !important;
  }
}
#collapseButton {
  margin-right: 15px;
}

.cut-text {
  text-overflow: ellipsis;
  overflow: hidden;
  white-space: nowrap;
}

@media (min-width: 768px) {
  .modal-xl {
    width: 90%;
   max-width:830px;
  }
}
.wider-gutter > [class*='col-'] {
    padding-right:35px;
    padding-left:35px;
}