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Migration of configuration access from Module Scope (use statements) to <config_type> object #357

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Migration of configuration access from Module Scope (use statements) to <config_type> object#357
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mo-rickywong
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@mo-rickywong
mo-rickywong
opened on Mar 11, 2026

Are there any linked Issues or Pull Requests?

This PR provides and example of changes made to remove module scope configuration variables from a single kernel

Brief description

Migration of configuration access from module scope (use statements) will be a large task. Much of the infrastructure is on trunk and the remove of the intermediate access method provides a clean slate to begin migration.

This issue is to track progress of the migration

Further details of the issue.

Steps to remove module scope access from kernels.

  1. Pick a kernel, limit your change to 1 kernel at a time before moving on. The size of the change can balloon when following it back up the call tree.
  2. Modify the kernel to use configuration variables passed in via argument , see the illustrated example on what look out for.
  3. Search for algorithms which call the kernel. These algorithms should have the configuration variables extracted from the modeldb%config object. modeldb or config may need passing down the call tree to the appropriate algorithms. Please only extract the configuration variables required.
  4. Any routine where the configuration variables are extracted from modeldb%config should have those variables removed from module scope use statements if applicable. Enumeration parameters may be accessed from module scope as they are fixed values not set by namelist inputs.
  5. Update the unit-test for the migrated kernel. This should result in the unit-test no longer requiring the use of feigners.
  6. Create PR for your changes and update the table to track progress.

Example: Updates kernel to receive configuration variables by argument.

Image Example kernel before modifying

  1. This kernel is accessing two configuration modules identified as <namelist name>_config_mod, The variables accessed here are related to enumeration variables in the namelists (geometry, coord_system). The fixed enumeration values they may have (geometry_spherical,coord_system_xyz) are permitted in module scope as they are fixed values (declared with the parameter statement).

    Note: There are legacy modules that have been named in a similar fashion, only config modules which are generated at build time fall within the scope of this task.

  2. For PsyClone to process the kernel metadata for the namelist variables, specific keywords need to be accessed, GH_SCALAR and GH_REAL are already present in this example, GH_INTEGER needs to be added.

    Note: Support is currently only available to pass in scalar REAL, INTEGER, LOGICAL datatypes using GH_REAL, GH_INTEGER, GH_LOGICAL. Array variables are under development (Psyclone issue?).

  3. Increase the meta_args array size by the number of extra configuration arguments required.

  4. Using the appropriate metadata keywords, add an entry for each configuration variable to be passed in. Group configuration variables as a block at the end of the main arguments so they can be easily located. All configuration arguments should be marked as GH_READ.

  5. To aid developers, add inline comments which match the variable names in the kernel argument list. These should be the same names as the argument list (points 6&7), not a description of what the argument is.

  6. Add Doxygen comments to document the changes to the argument list, namelist variables should always be @param[in]/intent(in). It's not realistic that the author will know what the variable will mean as in this example, suggest the Doxygen comment should be of the form:
    !! @param[in] geometry base_mesh configuration variable

  7. Update the argument list to the kernel code,
    Note: Ordering/Naming of variables in points 5,6,7 should always match.

  8. Ensure declarations of the new arguments passed in are intent(in).

  9. No comment

  10. PLEASE CONSIDER: Do these variables need to be passed to the kernel at all?
    There are cases in the code were namelist variables are being accessed via module scope for a simple configuration error check or commentary. Before passing them all the way down through the kernel, consider:

    • Are these checks the responsibility of this low level code?
    • Is the commentary something that can be controlled via LOG_LEVEL_DEBUG/LOG_LEVEL_TRACE?
    • Is the instance of code for debugging more appropriate on a development branch?
Image Example kernel after modifying

Details Files in lfric apps which use config from module scope

applications/gravity_wave/source/driver/create_gravity_wave_prognostics_mod.f90
applications/gravity_wave/source/driver/gravity_wave_infrastructure_mod.f90
applications/gravity_wave/source/driver/gravity_wave_driver_mod.f90
applications/gravity_wave/source/initialisation/analytic_buoyancy_profiles_mod.F90
./applications/gravity_wave/source/gravity_wave.f90
./applications/gravity_wave/source/algorithm/gw_mixed_schur_precon_alg_mod.x90
./applications/gravity_wave/source/algorithm/gw_mixed_diag_precon_alg_mod.x90
./applications/gravity_wave/source/algorithm/gravity_wave_alg_mod.x90
./applications/gravity_wave/source/algorithm/gw_mixed_operator_alg_mod.x90
./applications/gravity_wave/source/algorithm/gw_init_fields_alg_mod.x90
./applications/gravity_wave/source/algorithm/gw_pressure_precon_alg_mod.x90
./applications/gravity_wave/source/algorithm/gw_pressure_operator_alg_mod.x90
./applications/gravity_wave/unit-test/kernel/compute_q_operator_kernel_mod_test.pf
./applications/gravity_wave/unit-test/kernel/initial_buoyancy_kernel_mod_test.pf
./applications/gravity_wave/unit-test/initialisation/analytic_buoyancy_profiles_mod_test.pf
./applications/ngarch/source/driver/override_timestep_mod.f90
./applications/ngarch/source/ngarch.f90
./applications/ngarch/source/algorithm/boundary_layer_timestep_mod.x90
./applications/jules/source/jules.f90
./applications/name_transport/source/kernel/set_name_field_kernel_mod.F90
./applications/name_transport/source/driver/name_transport_driver_mod.f90
./applications/name_transport/source/initialisation/analytic_name_field_profiles_mod.F90
./applications/name_transport/source/name_transport.f90
./applications/name_transport/source/algorithm/name_transport_init_fields_alg_mod.x90
./applications/name_transport/source/algorithm/name_transport_control_alg_mod.x90
./applications/name_transport/unit-test/kernel/set_name_field_kernel_mod_test.pf
./applications/name_transport/unit-test/initialisation/analytic_name_field_profiles_mod_test.pf
./applications/jedi_lfric_tests/integration-test/algorithm/algorithm_test.f90
./applications/jedi_lfric_tests/source/jedi_lfric_tests.f90
./applications/jedi_lfric_tests/source/jedi-interface/jedi_checksum_mod.f90
./applications/jedi_lfric_tests/source/jedi-interface/jedi_run_mod.f90
./applications/solver/source/solver.F90
./applications/solver/source/driver/init_solver_miniapp.F90
./applications/solver/source/algorithm/solver_miniapp_alg_mod.x90
./applications/lfric2lfric/source/lfric2lfric.F90
./applications/lfric2lfric/source/driver/lfric2lfric_init_mod.f90
./applications/lfric2lfric/source/driver/lfric2lfric_driver_mod.F90
./applications/lfric2lfric/source/driver/lfric2lfric_regrid_mod.F90
./applications/lfric2lfric/source/initialisation/lfric2lfric_field_init_mod.f90
./applications/lfric2lfric/source/initialisation/lfric2lfric_infrastructure_mod.X90
./applications/lfric2lfric/source/initialisation/lfric2lfric_file_init_mod.f90
./applications/lfric2lfric/source/initialisation/lfric2lfric_init_mesh.f90
./applications/lfric2lfric/source/configuration/lfric2lfric_check_conf_mod.f90
./applications/lfricinputs/source/scintelapi/top_level/scintelapi_interface_mod.f90
./applications/lfricinputs/source/um2lfric/um2lfric_regrid_weights_mod.f90
./applications/lfricinputs/source/um2lfric/um2lfric_check_input_data_mod.f90
./applications/lfricinputs/source/common/lfricinp_create_lfric_fields_mod.f90
./applications/lfricinputs/source/common/lfricinp_lfric_driver_mod.f90
./applications/lfricinputs/source/lfric2um/lfric2um_exner_above_top_mod.f90
./applications/lfricinputs/source/lfric2um/lfric2um_conv_exner_mod.f90
./applications/shallow_water/source/kernel/initial_geopot_kernel_mod.F90
./applications/shallow_water/source/kernel/initial_vorticity_v2_kernel_mod.F90
./applications/shallow_water/source/kernel/initial_swe_streamfunc_kernel_mod.F90
./applications/shallow_water/source/kernel/initial_swe_u_kernel_mod.F90
./applications/shallow_water/source/kernel/initial_swe_buoyancy_kernel_mod.F90
./applications/shallow_water/source/kernel/initial_surface_geopot_kernel_mod.F90
./applications/shallow_water/source/driver/shallow_water_driver_mod.f90
./applications/shallow_water/source/driver/create_shallow_water_prognostics_mod.f90
./applications/shallow_water/source/driver/shallow_water_setup_io_mod.f90
./applications/shallow_water/source/driver/shallow_water_diagnostics_mod.x90
./applications/shallow_water/source/driver/shallow_water_model_mod.F90
./applications/shallow_water/source/driver/shallow_water_init_fields_mod.F90
./applications/shallow_water/source/driver/shallow_water_step_mod.F90
./applications/shallow_water/source/initialisation/analytic_swe_buoyancy_profiles_mod.F90
./applications/shallow_water/source/initialisation/galewsky_test_case_mod.F90
./applications/shallow_water/source/initialisation/analytic_swe_streamfunction_profiles_mod.F90
./applications/shallow_water/source/initialisation/analytic_swe_wind_profiles_mod.F90
./applications/shallow_water/source/initialisation/analytic_geopot_profiles_mod.F90
./applications/shallow_water/source/algorithm/swe_predictors_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_rhs_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_geopotential_operator_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_transport_control_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_timestep_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_mixed_schur_precon_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_mixed_diag_precon_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_mixed_operator_alg_mod.x90
./applications/shallow_water/source/algorithm/swe_init_fields_alg_mod.x90
./applications/shallow_water/source/shallow_water.f90
./applications/shallow_water/unit-test/kernel/initial_swe_buoyancy_kernel_mod_test.pf
./applications/shallow_water/unit-test/kernel/initial_swe_u_kernel_mod_test.pf
./applications/shallow_water/unit-test/kernel/swe_buoyancy_gradient_facet_kernel_mod_test.pf
./applications/shallow_water/unit-test/kernel/initial_swe_tracer_kernel_mod_test.pf
./applications/shallow_water/unit-test/kernel/initial_geopot_kernel_mod_test.pf
./applications/shallow_water/unit-test/initialisation/analytic_geopot_profiles_mod_test.pf
./applications/shallow_water/unit-test/initialisation/analytic_swe_buoyancy_profiles_mod_test.pf
./applications/shallow_water/unit-test/initialisation/analytic_swe_wind_profiles_mod_test.pf
./applications/shallow_water/unit-test/initialisation/galewsky_test_case_mod_test.pf
./applications/shallow_water/unit-test/initialisation/analytic_swe_streamfunction_profiles_mod_test.pf
./applications/adjoint_tests/source/driver/adjoint_test_driver_mod.f90
./applications/adjoint_tests/source/adjoint_tests.f90
./applications/adjoint_tests/source/algorithm/adjt_sci_psykal_builtin_alg_mod.x90
./applications/adjoint_tests/source/algorithm/lookup/solver/adjt_apply_helmholtz_op_lookup_alg_mod.x90
./applications/adjoint_tests/source/algorithm/lookup/transport/mol/adjt_poly2d_recon_lookup_alg_mod.x90
./applications/adjoint_tests/source/algorithm/lookup/transport/mol/adjt_poly_adv_upd_lookup_alg_mod.x90
./applications/adjoint_tests/source/algorithm/lookup/transport/mol/adjt_w3h_adv_upd_lookup_alg_mod.x90
./applications/adjoint_tests/source/algorithm/lookup/transport/mol/adjt_poly1d_recon_lookup_alg_mod.x90
./applications/adjoint_tests/source/algorithm/solver/adjt_mixed_solver_alg_mod.x90
./applications/adjoint_tests/source/algorithm/solver/adjt_mixed_schur_preconditioner_alg_mod.x90
./applications/adjoint_tests/source/algorithm/solver/adjt_semi_implicit_solver_step_alg_mod.x90
./applications/adjoint_tests/source/algorithm/solver/adjt_pressure_precon_alg_mod.x90
./applications/adjoint_tests/source/algorithm/solver/adjt_scaled_matrix_vector_alg_mod.x90
./applications/adjoint_tests/source/algorithm/solver/adjt_mixed_operator_alg_mod.x90
./applications/adjoint_tests/source/algorithm/core_dynamics/atlt_rhs_alg_mod.x90
./applications/adjoint_tests/source/algorithm/core_dynamics/adjt_compute_vorticity_alg_mod.x90
./applications/adjoint_tests/source/algorithm/core_dynamics/atlt_moist_dyn_factors_alg_mod.x90
./applications/adjoint_tests/source/algorithm/core_dynamics/atlt_derive_exner_from_eos_alg_mod.x90
./applications/adjoint_tests/source/algorithm/core_dynamics/atlt_pressure_gradient_bd_alg_mod.x90
./applications/adjoint_tests/source/algorithm/linear_physics/atlt_bdy_lyr_alg_mod.x90
./applications/adjoint_tests/source/algorithm/linear_physics/atlt_bl_inc_alg_mod.x90
./applications/adjoint_tests/source/algorithm/inter_function_space/adjt_sci_convert_hdiv_field_alg_mod.X90
./applications/adjoint_tests/source/algorithm/timestepping/atlt_si_timestep_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/control/atlt_wind_transport_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/control/atlt_moist_mr_transport_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/control/atlt_transport_field_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/control/atlt_theta_transport_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/control/adjt_transport_controller_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/control/atlt_transport_control_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/control/atlt_transport_controller_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_poly_adv_update_alg_mod.X90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_mol_advective_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_reconstruct_w3_field_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_mol_conservative_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_w3h_advective_update_alg_mod.X90
./applications/adjoint_tests/source/algorithm/transport/mol/adjt_wt_advective_update_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_poly1d_vert_w3_recon_alg_mod.X90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_advective_and_flux_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/mol/adjt_reconstruct_w3_field_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/mol/atlt_wt_advective_update_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/common/adjt_end_transport_step_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/common/atlt_end_transport_step_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/common/adjt_flux_precomputations_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/common/adjt_wind_precomputations_alg_mod.x90
./applications/adjoint_tests/source/algorithm/transport/setup_test_alg_mod.x90
./applications/adjoint_tests/source/algorithm/interpolation/adjt_interpolation_alg_mod.x90
./applications/transport/source/kernel/set_tracer_field_kernel_mod.F90
./applications/transport/source/kernel/initial_tracer_field_sample_kernel_mod.F90
./applications/transport/source/driver/transport_driver_mod.f90
./applications/transport/source/transport.f90
./applications/transport/source/initialisation/analytic_tracer_field_profiles_mod.F90
./applications/transport/source/algorithm/transport_control_alg_mod.x90
./applications/transport/source/algorithm/mass_conservation_alg_mod.x90
./applications/transport/source/algorithm/transport_init_fields_alg_mod.x90
./applications/transport/unit-test/kernel/initial_tracer_field_sample_kernel_mod_test.pf
./applications/transport/unit-test/kernel/set_tracer_field_kernel_mod_test.pf
./applications/transport/unit-test/initialisation/analytic_tracer_field_profiles_mod_test.pf
./applications/lfric_atm/source/lfric_atm.f90
./applications/lfric_coupled/source/lfric_coupled.f90
./applications/gungho_model/source/gungho_model.f90
./applications/linear_model/source/linear_model.f90
./interfaces/jules_interface/source/kernel/initial_surface_kernel_mod.F90
./interfaces/jules_interface/source/kernel/jules_imp_kernel_mod.F90
./interfaces/jules_interface/source/kernel/initial_snow_kernel_mod.F90
./interfaces/jules_interface/source/kernel/jules_exp_kernel_mod.F90
./interfaces/jules_interface/source/kernel/initial_soil_kernel_mod.F90
./interfaces/jules_interface/source/kernel/lw_rad_tile_kernel_mod.F90
./interfaces/jules_interface/source/support/jules_physics_init_mod.f90
./interfaces/jules_interface/source/support/jules_control_init_mod.f90
./interfaces/jules_interface/source/algorithm/rad_tile_alg_mod.x90
./interfaces/jules_interface/source/algorithm/jules_exp_alg_mod.x90
./interfaces/jules_interface/source/algorithm/jules_imp_alg_mod.x90
./interfaces/jules_interface/source/algorithm/jules_extra_alg_mod.x90
./interfaces/jules_interface/source/algorithm/process_inputs_alg_mod.x90
./interfaces/jules_interface/source/algorithm/init_surface_fields_alg_mod.x90
./interfaces/jules_interface/source/algorithm/lake_water_correction_alg_mod.x90
./interfaces/jules_interface/source/algorithm/init_soil_fields_alg_mod.x90
./interfaces/jules_interface/source/algorithm/update_ancils_alg_mod.x90
./interfaces/jules_interface/source/algorithm/process_urban_alg_mod.x90
./interfaces/socrates_interface/source/kernel/illuminate_kernel_mod.F90
./interfaces/socrates_interface/source/kernel/sw_mts_kernel_mod.F90
./interfaces/socrates_interface/source/kernel/cosp_kernel_mod.f90
./interfaces/socrates_interface/source/kernel/sw_kernel_mod.F90
./interfaces/socrates_interface/source/kernel/lw_inc_kernel_mod.F90
./interfaces/socrates_interface/source/kernel/sw_inc_kernel_mod.F90
./interfaces/socrates_interface/source/kernel/lw_kernel_mod.F90
./interfaces/socrates_interface/source/algorithm/gas_calc_all_mod.f90
./interfaces/socrates_interface/source/algorithm/cosp_alg_mod.x90
./interfaces/socrates_interface/source/algorithm/init_radiation_fields_alg_mod.x90
./interfaces/socrates_interface/source/algorithm/illuminate_alg_mod.x90
./interfaces/socrates_interface/source/algorithm/gas_calc_mod.f90
./interfaces/socrates_interface/source/algorithm/radiation_alg_mod.x90
./interfaces/socrates_interface/source/algorithm/rad_cloud_alg_mod.x90
./interfaces/socrates_interface/source/algorithm/cosp_diags_mod.x90
./interfaces/socrates_interface/source/algorithm/socrates_init_mod.f90
./interfaces/coupled_interface/source/coupler_mod.F90
./interfaces/coupled_interface/source/kernel/process_o2a_kernel_mod.F90
./interfaces/coupled_interface/source/algorithm/coupler_update_prognostics_mod.X90
./interfaces/coupled_interface/source/algorithm/accumulate_send_fields_2d_mod.X90
./interfaces/coupled_interface/source/algorithm/process_recv_fields_2d_mod.x90
./interfaces/coupled_interface/source/algorithm/process_send_fields_2d_mod.X90
./interfaces/physics_schemes_interface/source/psy/psykal_lite_phys_mod.F90
./interfaces/physics_schemes_interface/source/kernel/aerosol_ukca_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/stph/spt_saturation_cap_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/stph/blpert_increment_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/stph/blpert_update_rand_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/casim_activate_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/locate_tropopause_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/mphys_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bl_exp_du_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/casim_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/orographic_drag_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/spectral_gwd_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bl_extra_diags_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/conv_comorph_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bm_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/radaer_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bl_imp_du_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bm_tau_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bl_imp_diag_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/fsd_condensate_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/glomap_aerosol_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/photol_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/strat_aerosol_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/pc2_initiation_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/mphys_turb_gen_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bl_exp_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/conv_gr_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/initial_cloud_kernel_mod.F90
./interfaces/physics_schemes_interface/source/kernel/bl_imp2_kernel_mod.F90
./interfaces/physics_schemes_interface/source/diagnostics/cld_diags_mod.x90
./interfaces/physics_schemes_interface/source/support/um_physics_init_mod.f90
./interfaces/physics_schemes_interface/source/support/um_ukca_init_mod.f90
./interfaces/physics_schemes_interface/source/support/fastjx_specs_mod.f90
./interfaces/physics_schemes_interface/source/support/fastjx_inphot_mod.f90
./interfaces/physics_schemes_interface/source/support/um_sizes_init_mod.f90
./interfaces/physics_schemes_interface/source/support/um_radaer_lut_init.f90
./interfaces/physics_schemes_interface/source/constants/planet_constants_mod.F90
./interfaces/physics_schemes_interface/source/iau/printing_iau_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/blpert_main_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/bl_imp_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/skeb_ndisp_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/orographic_drag_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/pc2_conv_coupling_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/pc2_rad_response_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/spt_main_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/pc2_pressure_forcing_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/surf_temp_forcing_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/init_chemistry_fields_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/conv_ll_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/um_control_init_mod.f90
./interfaces/physics_schemes_interface/source/algorithm/flux_calc_all_mod.f90
./interfaces/physics_schemes_interface/source/algorithm/radaer_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/murk_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/freeze_lev_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/casim_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/map_drag_incs_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/aerosol_ukca_alg_mod.x90
./interfaces/physics_schemes_interface/source/algorithm/methox_alg_mod.x90
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./science/gungho/source/algorithm/runtime_constants/transport_constants_mod.x90
./science/gungho/source/algorithm/initialisation/init_physics_prognostics_alg_mod.X90
./science/gungho/source/algorithm/initialisation/sample_init_u_alg_mod.x90
./science/gungho/source/algorithm/initialisation/set_rho_alg_mod.x90
./science/gungho/source/algorithm/initialisation/init_thermo_profile_alg_mod.x90
./science/gungho/source/algorithm/initialisation/init_unsaturated_profile_alg_mod.x90
./science/gungho/source/algorithm/initialisation/init_saturated_profile_alg_mod.x90
./science/gungho/source/algorithm/initialisation/init_gungho_prognostics_alg_mod.x90
./science/gungho/source/algorithm/limited_area/map_um_lbc_inputs_alg_mod.x90
./science/gungho/source/algorithm/limited_area/limited_area_lbc_alg_mod.x90
./science/gungho/source/algorithm/limited_area/limited_area_masks_alg_mod.x90
./science/gungho/source/algorithm/limited_area/init_gungho_lbcs_alg_mod.x90
./science/gungho/source/algorithm/diffusion/smagorinsky_alg_mod.x90
./science/gungho/source/algorithm/diffusion/leonard_term_alg_mod.x90
./science/gungho/source/algorithm/diffusion/mixing_alg_mod.x90
./science/gungho/source/configuration/check_configuration_mod.F90
./science/gungho/source/configuration/orography_control_mod.F90
./science/gungho/unit-test/kernel/external_forcing/earth_like_kernel_mod_test.pf
./science/gungho/unit-test/kernel/external_forcing/shallow_hot_jupiter_kernel_mod_test.pf
./science/gungho/unit-test/kernel/external_forcing/held_suarez_kernel_mod_test.pf
./science/gungho/unit-test/kernel/external_forcing/deep_hot_jupiter_kernel_mod_test.pf
./science/gungho/unit-test/kernel/external_forcing/tidally_locked_earth_kernel_mod_test.pf
./science/gungho/unit-test/kernel/solver/weighted_div_kernel_mod_test.pf
./science/gungho/unit-test/kernel/solver/project_eos_operators_kernel_mod_test.pf
./science/gungho/unit-test/kernel/solver/eliminated_theta_q22_kernel_mod_test.pf
./science/gungho/unit-test/kernel/solver/sample_eos_operators_kernel_mod_test.pf
./science/gungho/unit-test/kernel/solver/weighted_m3_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/rhs_sample_eos_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/rotation_vector_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/vorticity_rhs_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/sample_eos_rho_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/rhs_project_eos_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/moist_dyn_gas_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/compute_dl_matrix_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/project_eos_pressure_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/pressure_gradient_bd_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/project_eos_rho_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/compute_vert_coriolis_matrix_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/compute_coriolis_matrix_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/kinetic_energy_gradient_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/calc_exner_pointwise_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/sample_eos_pressure_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/lagged_orog_operator_kernel_mod_test.pf
./science/gungho/unit-test/kernel/core_dynamics/compute_geopotential_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/cfl_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/compute_energetics_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/compute_total_aam_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/reference_profile_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/compute_entropy_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/compute_bottom_mass_from_flux_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/compute_moist_mass_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diagnostics/compute_total_pv_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/sl/vertical_mass_remapping_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/mol/poly1d_vert_adv_coeffs_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/mol/poly1d_flux_coeffs_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/mol/poly2d_advective_coeffs_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/mol/poly1d_advective_coeffs_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/mol/poly2d_flux_coeffs_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/mol/polyv_wtheta_koren_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/common/calc_upwind_detj_at_w2_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/common/transport_metadata_collection_test.pf
./science/gungho/unit-test/kernel/transport/common/panel_edge_coords_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/common/w2_vorticity_advection_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/common/vert_dep_dist_lagrangian_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/common/departure_points_support_mod_test.pf
./science/gungho/unit-test/kernel/transport/common/panel_edge_weights_kernel_mod_test.pf
./science/gungho/unit-test/kernel/transport/common/vorticity_advection_kernel_mod_test.pf
./science/gungho/unit-test/kernel/initialisation/initial_rho_sample_kernel_mod_test.pf
./science/gungho/unit-test/kernel/initialisation/generate_global_gw_fields_mod_test.pf
./science/gungho/unit-test/kernel/initialisation/hydrostatic_coriolis_kernel_mod_test.pf
./science/gungho/unit-test/kernel/initialisation/initial_u_kernel_mod_test.pf
./science/gungho/unit-test/kernel/initialisation/hydrostatic_exner_kernel_mod_test.pf
./science/gungho/unit-test/kernel/initialisation/hydro_shallow_to_deep_kernel_mod_test.pf
./science/gungho/unit-test/kernel/initialisation/set_rho_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_w2mask_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_w2mask_tang_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_w3mask_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_w3mask_blend_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_w2mask_blend_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/#create_w2mask_kernel_mod_test.pf#
./science/gungho/unit-test/kernel/limited_area/create_w2mask_lbc_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_wthetamask_blend_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_wthetamask_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/splice_fields_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_w2bmask_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_w3mask_lbc_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/create_wthetamask_lbc_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/set_blending_weights_kernel_mod_test.pf
./science/gungho/unit-test/kernel/limited_area/set_blending_weights_w2_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diffusion/tracer_viscosity_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diffusion/leonard_term_kl_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diffusion/momentum_viscosity_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diffusion/tracer_smagorinsky_diff_kernel_mod_test.pf
./science/gungho/unit-test/kernel/diffusion/leonard_term_th_kernel_mod_test.pf
./science/gungho/unit-test/mesh/gungho_extrusion_mod_test.pf
./science/gungho/unit-test/diagnostics/initialise_diagnostics_mod_test.pf
./science/gungho/unit-test/orography/schar_orography_spherical_mod_test.pf
./science/gungho/unit-test/orography/ancil_orography_spherical_mod_test.pf
./science/gungho/unit-test/orography/agnesi_orography_spherical_mod_test.pf
./science/gungho/unit-test/orography/schar_orography_cartesian_mod_test.pf
./science/gungho/unit-test/orography/dcmip200_orography_spherical_mod_test.pf
./science/gungho/unit-test/orography/analytic_orography_field_spherical_mod_test.pf
./science/gungho/unit-test/orography/agnesi_orography_cartesian_mod_test.pf
./science/gungho/unit-test/orography/analytic_orography_field_cartesian_mod_test.pf
./science/gungho/unit-test/orography/ancil_orography_cartesian_mod_test.pf
./science/gungho/unit-test/initialisation/deep_baroclinic_wave_mod_test.pf
./science/gungho/unit-test/initialisation/analytic_wind_profiles_mod_test.pf
./science/gungho/unit-test/initialisation/analytic_density_profiles_mod_test.pf
./science/gungho/unit-test/initialisation/analytic_temperature_profiles_mod_test.pf
./science/adjoint/source/kernel/inter_function_space/adj_sci_convert_hdiv_field_kernel_mod.F90
./science/adjoint/source/driver/adjoint_model_mod.x90
./science/adjoint/source/algorithm/lookup/solver/adj_solver_lookup_cache_mod.x90
./science/adjoint/source/algorithm/lookup/adj_lookup_table_mod.x90
./science/adjoint/source/algorithm/lookup/transport/adj_trans_lookup_cache_mod.x90
./science/adjoint/source/algorithm/solver/adj_mixed_schur_preconditioner_alg_mod.x90
./science/adjoint/source/algorithm/solver/adj_semi_implicit_solver_alg_mod.x90
./science/adjoint/source/algorithm/solver/adj_pressure_operator_alg_mod.x90
./science/adjoint/source/algorithm/solver/adj_mixed_operator_alg_mod.x90
./science/adjoint/source/algorithm/core_dynamics/adj_compute_vorticity_alg_mod.x90
./science/adjoint/source/algorithm/core_dynamics/atl_rhs_alg_mod.x90
./science/adjoint/source/algorithm/core_dynamics/atl_derive_exner_from_eos_alg_mod.x90
./science/adjoint/source/algorithm/core_dynamics/atl_moist_dyn_factors_alg_mod.x90
./science/adjoint/source/algorithm/linear_physics/atl_bdy_lyr_alg.x90
./science/adjoint/source/algorithm/linear_physics/atl_physics_alg.x90
./science/adjoint/source/algorithm/timestepping/atl_si_timestep_alg_mod.x90
./science/adjoint/source/algorithm/transport/control/atl_split_transport_mod.x90
./science/adjoint/source/algorithm/transport/control/atl_theta_transport_alg_mod.x90
./science/adjoint/source/algorithm/transport/control/atl_wind_transport_alg_mod.x90
./science/adjoint/source/algorithm/transport/control/adj_transport_controller_mod.x90
./science/adjoint/source/algorithm/transport/control/atl_transport_control_alg_mod.x90
./science/adjoint/source/algorithm/transport/mol/atl_wt_advective_update_alg_mod.x90
./science/adjoint/source/algorithm/transport/mol/atl_reconstruct_w3_field_alg_mod.x90
./science/adjoint/source/algorithm/transport/mol/adj_wt_advective_update_alg_mod.x90
./science/adjoint/source/algorithm/transport/mol/atl_mol_conservative_alg_mod.x90
./science/adjoint/source/algorithm/transport/mol/atl_advective_and_flux_alg_mod.x90
./science/adjoint/source/algorithm/transport/mol/atl_mol_advective_alg_mod.x90
./science/adjoint/source/algorithm/transport/mol/adj_reconstruct_w3_field_alg_mod.x90
./science/adjoint/source/algorithm/transport/common/adj_substep_transport_alg_mod.f90
./science/adjoint/source/algorithm/transport/common/adj_flux_precomputations_mod.x90
./science/adjoint/source/algorithm/transport/common/atl_end_transport_step_alg_mod.x90
./science/adjoint/source/algorithm/transport/common/adj_end_transport_step_alg_mod.x90

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