diff --git a/README.html b/README.md similarity index 53% rename from README.html rename to README.md index 3cc3801..4da9d5e 100644 --- a/README.html +++ b/README.md @@ -1,42 +1,40 @@ -
This code accompanies the publication:
-Schmidt-Hieber C, Hausser M (2013)
-Cellular mechanisms of spatial navigation in the medial entorhinal
-cortex.
-Nat Neurosci 16:325--331
+Schmidt-Hieber C, Hausser M (2013)
+Cellular mechanisms of spatial navigation in the medial entorhinal cortex.
+*Nat Neurosci* 16:325–331
Send comments to c.schmidt-hieber_at_ucl.ac.uk
-Currently, only the compartmental stellate cell model [1] is included.
+Currently, only the compartmental stellate cell model [1] is included.
I will add the oi and can model implementations at a later time.
-INSTALLATION
+# INSTALLATION
-Install NEURON, ideally with Python support:
+Install NEURON, ideally with Python support:
http://www.neuron.yale.edu
-USAGE
+# USAGE
-1. Compile the mechanism files in the mod directory:
+1. Compile the mechanism files in the mod directory:
$ nrnivmodl nrn/mod
-2. Run the demo:
+2. Run the demo:
$ ./x86_64/special demo/test_rin.hoc -
or
$ python demo/test_rin.py
-The demo runs with 11 injected current pulses from -0.05 to .45 nA in
-steps of 0.05. When the demo is finished (takes a few seconds) you
-should have a graph that looks like this:
+The demo runs with 11 injected current pulses from -0.05 to .45 nA in steps of 0.05. When the demo is finished (takes a few seconds) you should have a graph that looks like this:
-
+
-[1] Morphology based on:
-D. L. Garden, P. D. Dodson, C. O'Donnell, M. D. White, M. F. Nolan
-Tuning of synaptic integration in the medial entorhinal cortex to the
-organization of grid cell firing fields.
-Neuron 60, 875 (2008).
-
+[1] Morphology based on:
+D. L. Garden, P. D. Dodson, C. O'Donnell, M. D. White, M. F. Nolan
+Tuning of synaptic integration in the medial entorhinal cortex to the organization of grid cell firing fields.
+*Neuron* 60, 875 (2008).
+
+---
+
+2025-07-09: Converted README to Markdown.
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