Update documentation, adjust logging output

Author: LisoUseInAIKyrios

docs/1_usage.md

@@ -98,16 +98,22 @@ java -jar morphe-cli.jar patch --patches patches.mpp -i "Patch name" -Okey1 inpu
 
 ## 📃 Patch option json
 
-Generate a template patch options file:
+Generate a template patch options file, or update your existing file (remove invalid json, add missing json):
 ```bash
-java -jar morphe-cli.jar options --patches patches.mpp options-create --out options.json
+java -jar morphe-cli.jar options-create --patches patches.mpp --out options.json
 ```
 
 After modifying the json file to include/exclude patches or set any patch options, use the file with `--options-file`:
 ```bash
 java -jar morphe-cli.jar patch --patches patches.mpp --options-file options.json input.apk
 ```
 
+To patch with an options.json and update the json (same functionality as `options-create` above),
+then add parameter `--options-update`:
+```bash
+java -jar morphe-cli.jar patch --patches patches.mpp --options-file options.json --options-update input.apk
+```
+
 
 ## 📃 List patches
 

src/main/kotlin/app/morphe/cli/command/OptionsCommand.kt

@@ -101,7 +101,7 @@ internal object OptionsCommand : Callable<Int> {
                 val removed = existingNames - newNames
                 val kept = newNames.intersect(existingNames)
                 logger.info("Updated bundle in options file at ${outputFile.path}")
-                logger.info("  ${kept.size} patch(es) preserved, ${added.size} added, ${removed.size} removed")
+                logger.info("  ${kept.size} patches preserved, ${added.size} added, ${removed.size} removed")
             } else {
                 logger.info("Created new bundle in options file at ${outputFile.path} with ${updatedBundle.patches.size} patches")
             }

src/main/kotlin/app/morphe/cli/command/PatchCommand.kt

@@ -473,15 +473,15 @@ internal object PatchCommand : Callable<Int> {
                     if (newPatches.isNotEmpty() || removedPatches.isNotEmpty() || patchesWithNewOptions > 0) {
                         logger.warning("Your options file is out of date with the current patches:")
                         if (newPatches.isNotEmpty()) {
-                            logger.warning("  ${newPatches.size} new patch(es) not in your options file (will use defaults)")
+                            logger.warning("  ${newPatches.size} new patches not in your options file, default patch values will be applied")
                         }
                         if (removedPatches.isNotEmpty()) {
-                            logger.warning("  ${removedPatches.size} patch(es) in your options file no longer exist (will be ignored)")
+                            logger.warning("  ${removedPatches.size} patches in your options file no longer exist and will be ignored")
                         }
                         if (patchesWithNewOptions > 0) {
-                            logger.warning("  $patchesWithNewOptions patch(es) have new options not in your file (will use defaults)")
+                            logger.warning("  $patchesWithNewOptions patches have new options not in your file, default patch values will be applied")
                         }
-                        logger.warning("  Run with --options-update to sync, or use 'options-create' to regenerate.")
+                        logger.warning("  Use --options-update parameter to sync, or use 'options-create' command to regenerate.")
                     }
                 }