changed to neurodesktop image. use ashburn intance

iishiishii · iishiishii · commit 2e1f2665ebfe · 2023-06-28T10:43:56.000+10:00
diff --git a/.github/workflows/test_changed_notebook.yml b/.github/workflows/test_changed_notebook.yml
@@ -37,7 +37,7 @@ jobs:
       shell: bash
       run: |
         python -m pip install --upgrade pip
-        python -m pip install jupyter-book ghp-import graphviz
+        python -m pip install jupyter-book ghp-import graphviz graphviz-dev ipyniivue
 
     - name: Run qsmxt_example
       shell: bash
diff --git a/Dockerfile b/Dockerfile
@@ -1,4 +1,4 @@
-FROM syd.ocir.io/sd63xuke79z3/binderhub/jupyter-neurodesktop-proxy:20221215033354
+FROM syd.ocir.io/sd63xuke79z3/neurodesk/neurodesktop:20230622
 ADD "http://api.github.com/repos/NeuroDesk/example-notebooks/commits/main" /tmp/skipcache
 WORKDIR /home/jovyan
 RUN mkdir /home/jovyan/examples
diff --git a/_config.yml b/_config.yml
@@ -17,7 +17,7 @@ execute:
 launch_buttons:
   colab_url: "https://colab.research.google.com"
   notebook_interface: "jupyterlab"
-  binderhub_url: "https://play-sydney.neurodesk.org/v2/gh/neurodesk/example-notebooks"
+  binderhub_url: "https://play-ashburn.neurodesk.org/v2/gh/neurodesk/example-notebooks"
 
 # Define the name of the latex output file for PDF builds
 # latex:
@@ -26,13 +26,14 @@ launch_buttons:
 
 # Information about where the book exists on the web
 repository:
-  url: https://github.com/iishiishii/example-notebooks # Online location of your book
+  url: https://github.com/NeurodDesk/example-notebooks # Online location of your book
   branch: overwrite  # Which branch of the repository should be used when creating links (optional)
 
 # Add GitHub buttons to your book
 # See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository
 html:
-  baseurl: https://iishiishii.github.io/example-notebooks/
+  favicon: "neurodesk.svg"
+  baseurl: https://neurodesk.github.io/example-notebooks/
   use_issues_button: true
   use_repository_button: true
 
@@ -41,7 +42,7 @@ sphinx:
     # html_extra_path: ["CNAME", "robots.txt"]
     html_theme_options:
       use_download_button: true
-      repository_url: https://github.com/iishiishii/example-notebooks
+      repository_url: https://github.com/neurodesk/example-notebooks
       use_issues_button: true
       use_repository_button: true
       use_edit_page_button: true
diff --git a/functional_imaging/fmriprep_example.ipynb b/functional_imaging/fmriprep_example.ipynb
@@ -8,7 +8,7 @@
     "id": "view-in-github"
    },
    "source": [
-    "<a href=\"https://play-sydney.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Ffmriprep_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
+    "<a href=\"https://play-ashburn.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Ffmriprep_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
     "<a href=\"https://colab.research.google.com/github/NeuroDesk/example-notebooks/blob/main/functional_imaging/fmriprep_example.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>  </a>"
    ]
   },
diff --git a/functional_imaging/nipype_fsl_all_levels_flanker.ipynb b/functional_imaging/nipype_fsl_all_levels_flanker.ipynb
@@ -9,7 +9,7 @@
     "id": "view-in-github"
    },
    "source": [
-    "<a href=\"https://play-sydney.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Fnipype_fsl_all_levels_flanker.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
+    "<a href=\"https://play-ashburn.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Fnipype_fsl_all_levels_flanker.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
     "<a href=\"https://colab.research.google.com/github/NeuroDesk/example-notebooks/blob/main/functional_imaging/nipype_fsl_all_levels_flanker.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>   </a>"
    ]
   },
diff --git a/neurodesk.svg b/neurodesk.svg
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diff --git a/structural_imaging/nipype_module_example.ipynb b/structural_imaging/nipype_module_example.ipynb
@@ -9,7 +9,7 @@
     "id": "view-in-github"
    },
    "source": [
-    "<a href=\"https://play-sydney.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=structural_imaging%2Fnipype_module_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
+    "<a href=\"https://play-ashburn.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=structural_imaging%2Fnipype_module_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
     "<a href=\"https://colab.research.google.com/github/NeuroDesk/example-notebooks/blob/main/structural_imaging/nipype_module_example.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>   </a>"
    ]
   },
diff --git a/structural_imaging/qsmxt_example.ipynb b/structural_imaging/qsmxt_example.ipynb
@@ -9,7 +9,7 @@
     "id": "view-in-github"
    },
    "source": [
-    "<a href=\"https://play-sydney.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=structural_imaging%2Fqsmxt_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
+    "<a href=\"https://play-ashburn.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=structural_imaging%2Fqsmxt_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/>  </a>\n",
     "<a href=\"https://colab.research.google.com/github/NeuroDesk/example-notebooks/blob/main/structural_imaging/qsmxt_example.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>   </a>"
    ]
   },
diff --git a/structural_imaging/sct_toolbox_example.ipynb b/structural_imaging/sct_toolbox_example.ipynb

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-FROM syd.ocir.io/sd63xuke79z3/binderhub/jupyter-neurodesktop-proxy:20221215033354`
	`1`	`+FROM syd.ocir.io/sd63xuke79z3/neurodesk/neurodesktop:20230622`
`2`	`2`	`ADD "http://api.github.com/repos/NeuroDesk/example-notebooks/commits/main" /tmp/skipcache`
`3`	`3`	`WORKDIR /home/jovyan`
`4`	`4`	`RUN mkdir /home/jovyan/examples`
Original file line number	Diff line number	Diff line change
`@@ -8,7 +8,7 @@`
`8`	`8`	`"id": "view-in-github"`
`9`	`9`	`},`
`10`	`10`	`"source": [`
`11`		- "<a href=\"https://play-sydney.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Ffmriprep_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/> </a>\n",
	`11`	+ "<a href=\"https://play-ashburn.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Ffmriprep_example.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/> </a>\n",
`12`	`12`	`"<a href=\"https://colab.research.google.com/github/NeuroDesk/example-notebooks/blob/main/functional_imaging/fmriprep_example.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/> </a>"`
`13`	`13`	`]`
`14`	`14`	`},`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@`
`9`	`9`	`"id": "view-in-github"`
`10`	`10`	`},`
`11`	`11`	`"source": [`
`12`		- "<a href=\"https://play-sydney.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Fnipype_fsl_all_levels_flanker.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/> </a>\n",
	`12`	+ "<a href=\"https://play-ashburn.neurodesk.org/v2/gh/neurodesk/example-notebooks/main?labpath=functional_imaging%2Fnipype_fsl_all_levels_flanker.ipynb\" target=\"_parent\"><img src=\"https://img.shields.io/badge/launch-binder-579aca.svg?logo=data:image/png;base64,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\" alt=\"Open In Binder\"/> </a>\n",
`13`	`13`	`"<a href=\"https://colab.research.google.com/github/NeuroDesk/example-notebooks/blob/main/functional_imaging/nipype_fsl_all_levels_flanker.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/> </a>"`
`14`	`14`	`]`
`15`	`15`	`},`