diff --git a/02_activities/assignments/assignment-2 b/02_activities/assignments/assignment-2 new file mode 100644 index 000000000..e69de29bb diff --git a/02_activities/assignments/assignment-2.ipynb b/02_activities/assignments/assignment-2.ipynb new file mode 100644 index 000000000..1a6c2599d --- /dev/null +++ b/02_activities/assignments/assignment-2.ipynb @@ -0,0 +1,310 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 14, + "id": "03c9367f", + "metadata": {}, + "outputs": [], + "source": [ + "all_paths = [\n", + " \"05_src/data/assignment_2_data/inflammation_01.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_02.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_03.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_04.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_05.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_06.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_07.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_08.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_09.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_10.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_11.csv\",\n", + " \"05_src/data/assignment_2_data/inflammation_12.csv\"\n", + "]" + ] + }, + { + "cell_type": "code", + "execution_count": 16, + "id": "69f50fd3", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0,0,1,3,1,2,4,7,8,3,3,3,10,5,7,4,7,7,12,18,6,13,11,11,7,7,4,6,8,8,4,4,5,7,3,4,2,3,0,0\n", + "\n", + "0,1,2,1,2,1,3,2,2,6,10,11,5,9,4,4,7,16,8,6,18,4,12,5,12,7,11,5,11,3,3,5,4,4,5,5,1,1,0,1\n", + "\n", + "0,1,1,3,3,2,6,2,5,9,5,7,4,5,4,15,5,11,9,10,19,14,12,17,7,12,11,7,4,2,10,5,4,2,2,3,2,2,1,1\n", + "\n", + "0,0,2,0,4,2,2,1,6,7,10,7,9,13,8,8,15,10,10,7,17,4,4,7,6,15,6,4,9,11,3,5,6,3,3,4,2,3,2,1\n", + "\n", + "0,1,1,3,3,1,3,5,2,4,4,7,6,5,3,10,8,10,6,17,9,14,9,7,13,9,12,6,7,7,9,6,3,2,2,4,2,0,1,1\n", + 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"0,0,1,0,3,2,5,4,8,2,9,3,3,10,12,9,14,11,13,8,6,18,11,9,13,11,8,5,5,2,8,5,3,5,4,1,3,1,1,0\n", + "\n" + ] + } + ], + "source": [ + "with open(all_paths[0], 'r') as f: \n", + " lines = f.readlines() # read all lines from the file\n", + " for line in lines: # loop through each line\n", + " print(line) # print the line" + ] + }, + { + "cell_type": "code", + "execution_count": 34, + "id": "6086e1eb", + "metadata": {}, + "outputs": [], + "source": [ + "import numpy as np\n", + "\n", + "def patient_summary(file_path, opertation):\n", + " \n", + " \"\"\"Compute summary statistics for patient data.\n", + " Parameters ----------\n", + " file_path : str\n", + " Path to the CSV file containing patient data.\n", + " operation : str\n", + " The summary operation to perform. Supported operations are: 'mean', 'max', 'min'.\n", + " Returns -------\n", + " summary_values : numpy.ndarray\n", + " An array containing the computed summary values for each patient.\n", + " \"\"\"\n", + "\n", + " data = np.loadtxt(file_path, delimiter=',')\n", + " ax = 1\n", + "\n", + " if opertation == 'mean':\n", + " summary_values = np.mean(data, axis=ax)\n", + " elif opertation == 'max':\n", + " summary_values = np.max(data, axis=ax)\n", + " elif opertation == 'min':\n", + " summary_values = np.min(data, axis=ax)\n", + " else:\n", + " raise ValueError(\"Invalid operation. Supported operations are: 'mean', 'max', 'min'.\")\n", + "\n", + " return summary_values" + ] + }, + { + "cell_type": "code", + "execution_count": 35, + "id": "1bd5b026", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "60\n" + ] + } + ], + "source": [ + "#testing data file path and operation\n", + "data_min = patient_summary(all_paths[0], 'min')\n", + "print(len(data_min))" + ] + }, + { + "cell_type": "code", + "execution_count": 36, + "id": "0de87f72", + "metadata": {}, + "outputs": [], + "source": [ + "def check_zeros(x):\n", + "\n", + " \"\"\" \n", + " Check if there are any zeros in the input array.\n", + " Parameters ----------\n", + " x : array-like\n", + " Input array to check for zeros.\n", + " Returns -------\n", + " bool\n", + " True if there are any zeros in the array, False otherwise.\n", + " \"\"\"\n", + "\n", + " import numpy as np\n", + " x = np.asarray(x) #Ensures x is an array\n", + " return np.any(x == 0)" + ] + }, + { + "cell_type": "code", + "execution_count": 37, + "id": "b19c1b65", + "metadata": {}, + "outputs": [], + "source": [ + "def detect_problems(file_path):\n", + "\n", + " \"\"\" Detect if there are any problems in the patient data by checking for zeros in the mean values.\n", + " Parameters ---------- \n", + " file_path : str\n", + " Path to the CSV file containing patient data.\n", + " Returns -------\n", + " bool\n", + " True if there are any problems (zeros in the mean values), False otherwise.\n", + " \"\"\"\n", + " \n", + " means = patient_summary(file_path, 'mean')\n", + " problem_found = check_zeros(means)\n", + " return problem_found" + ] + }, + { + "cell_type": "code", + "execution_count": 38, + "id": "790936fe", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "False\n" + ] + } + ], + "source": [ + "print(detect_problems(all_paths[0]))" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "python-env", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.15" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/Assignment 1.ipynb b/Assignment 1.ipynb new file mode 100644 index 000000000..29e71f3c2 --- /dev/null +++ b/Assignment 1.ipynb @@ -0,0 +1,168 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "6e967208", + "metadata": {}, + "source": [ + "**Assignment 1**\n", + "*Anagram Checker*" + ] + }, + { + "cell_type": "code", + "execution_count": 16, + "id": "cb6f4638", + "metadata": {}, + "outputs": [], + "source": [ + "def anagram_checker (word1, word2):\n", + " return sorted(word1.lower()) == sorted(word2.lower())" + ] + }, + { + "cell_type": "code", + "execution_count": 17, + "id": "b71a1985", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "True\n" + ] + } + ], + "source": [ + "print (anagram_checker(\"listen\", \"silent\")\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": 18, + "id": "80762ea9", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "True\n" + ] + } + ], + "source": [ + "print(anagram_checker(\"night\", \"THING\"))" + ] + }, + { + "cell_type": "code", + "execution_count": 19, + "id": "da5e5a74", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "False\n" + ] + } + ], + "source": [ + "print (anagram_checker(\"Bottom\", \"Top\"))" + ] + }, + { + "cell_type": "code", + "execution_count": 20, + "id": "b5d10a0a", + "metadata": {}, + "outputs": [], + "source": [ + "def anagram_checker(word1, word2, is_case_sensitive):\n", + " if is_case_sensitive:\n", + " return sorted(word1) == sorted(word2)\n", + " else:\n", + " return sorted(word1.lower()) == sorted(word2.lower())" + ] + }, + { + "cell_type": "code", + "execution_count": 21, + "id": "5f0f55c7", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "True\n" + ] + } + ], + "source": [ + "print(anagram_checker(\"Silent\", \"listen\", False))" + ] + }, + { + "cell_type": "code", + "execution_count": 22, + "id": "1dccf4df", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "False\n" + ] + } + ], + "source": [ + "print(anagram_checker(\"Silent\", \"listen\", True))" + ] + }, + { + "cell_type": "code", + "execution_count": 23, + "id": "8e7abaeb", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "False\n" + ] + } + ], + "source": [ + "print(anagram_checker(\"Silent\", \"Listen\", True))" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "python-env", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.15" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +}